Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5109 | 3' | -61.2 | NC_001798.1 | + | 58408 | 0.66 | 0.727203 |
Target: 5'- uCGCgCGGCGCAgGCGGCcAGcGCGa-- -3' miRNA: 3'- -GCGgGCUGCGU-CGCCGcUCaCGCacu -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 2940 | 0.66 | 0.727203 |
Target: 5'- aGCUCG-CGCAGCcaggcgcgcaGGCGGGgcgcgucgGCGUGc -3' miRNA: 3'- gCGGGCuGCGUCG----------CCGCUCa-------CGCACu -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 25498 | 0.66 | 0.726256 |
Target: 5'- gGCCCGcugcgccGCGCGGCGGCcuGGaUGCGc-- -3' miRNA: 3'- gCGGGC-------UGCGUCGCCGc-UC-ACGCacu -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 122069 | 0.66 | 0.717699 |
Target: 5'- gCGUCgGACGCGGaGGCG-GUGC-UGGc -3' miRNA: 3'- -GCGGgCUGCGUCgCCGCuCACGcACU- -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 147992 | 0.66 | 0.717699 |
Target: 5'- uGCCCGGCcaCAGCcGUGGGUGUGg-- -3' miRNA: 3'- gCGGGCUGc-GUCGcCGCUCACGCacu -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 2665 | 0.66 | 0.717699 |
Target: 5'- gCGCCucccgCGGCGCGGaGGCGGGcGCGg-- -3' miRNA: 3'- -GCGG-----GCUGCGUCgCCGCUCaCGCacu -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 51679 | 0.66 | 0.717699 |
Target: 5'- cCGCCaGACGCuGCagcagGGCGAG-GCGcUGGc -3' miRNA: 3'- -GCGGgCUGCGuCG-----CCGCUCaCGC-ACU- -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 56273 | 0.66 | 0.717699 |
Target: 5'- cCGCagCCGACGaUAGCGcacCGAGgagGCGUGGg -3' miRNA: 3'- -GCG--GGCUGC-GUCGCc--GCUCa--CGCACU- -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 120381 | 0.66 | 0.708128 |
Target: 5'- uGCaCGACGCAGCGGgCGAuGUccGCGgGGg -3' miRNA: 3'- gCGgGCUGCGUCGCC-GCU-CA--CGCaCU- -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 67675 | 0.66 | 0.707168 |
Target: 5'- gGCUCgGACGCgaugaacggaaacAGCGGCGGGccCGUGGg -3' miRNA: 3'- gCGGG-CUGCG-------------UCGCCGCUCacGCACU- -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 79267 | 0.66 | 0.698498 |
Target: 5'- aGUUCGACGCGGCGGCc---GCG-GAc -3' miRNA: 3'- gCGGGCUGCGUCGCCGcucaCGCaCU- -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 86446 | 0.66 | 0.698498 |
Target: 5'- aGCCCGGgGaCGGgGGCcGGUuCGUGAg -3' miRNA: 3'- gCGGGCUgC-GUCgCCGcUCAcGCACU- -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 117678 | 0.66 | 0.698498 |
Target: 5'- aCGCgCGGC-CGGCGGCGuGUacGCGgggGAc -3' miRNA: 3'- -GCGgGCUGcGUCGCCGCuCA--CGCa--CU- -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 110991 | 0.66 | 0.698498 |
Target: 5'- aCGCCCGucagGCGC-GCGGUa--UGCGUGGc -3' miRNA: 3'- -GCGGGC----UGCGuCGCCGcucACGCACU- -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 139336 | 0.66 | 0.697532 |
Target: 5'- gCGCCCGcGCGCgcugugcggccauGGCGGCGuccgGCGggGAg -3' miRNA: 3'- -GCGGGC-UGCG-------------UCGCCGCuca-CGCa-CU- -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 142135 | 0.66 | 0.688816 |
Target: 5'- uGCCgGACGCGGCacaGGUG-GUGCacGUGu -3' miRNA: 3'- gCGGgCUGCGUCG---CCGCuCACG--CACu -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 51181 | 0.66 | 0.688816 |
Target: 5'- gGCCCGG-GCGGCGGCGcccccccgccGG-GCGUc- -3' miRNA: 3'- gCGGGCUgCGUCGCCGC----------UCaCGCAcu -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 79958 | 0.66 | 0.688816 |
Target: 5'- gCGUCCGGaGCGGCGGCGcc-GCGUc- -3' miRNA: 3'- -GCGGGCUgCGUCGCCGCucaCGCAcu -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 15440 | 0.66 | 0.688816 |
Target: 5'- gGCCCcggaguCGUggGGCGGgGGGUcGCGUGGg -3' miRNA: 3'- gCGGGcu----GCG--UCGCCgCUCA-CGCACU- -5' |
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5109 | 3' | -61.2 | NC_001798.1 | + | 17121 | 0.66 | 0.679091 |
Target: 5'- cCGCCCG-CG-AGCGGU-AGUGCGcggUGAg -3' miRNA: 3'- -GCGGGCuGCgUCGCCGcUCACGC---ACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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