miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 3' -61.2 NC_001798.1 + 2940 0.66 0.727203
Target:  5'- aGCUCG-CGCAGCcaggcgcgcaGGCGGGgcgcgucgGCGUGc -3'
miRNA:   3'- gCGGGCuGCGUCG----------CCGCUCa-------CGCACu -5'
5109 3' -61.2 NC_001798.1 + 58408 0.66 0.727203
Target:  5'- uCGCgCGGCGCAgGCGGCcAGcGCGa-- -3'
miRNA:   3'- -GCGgGCUGCGU-CGCCGcUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 25498 0.66 0.726256
Target:  5'- gGCCCGcugcgccGCGCGGCGGCcuGGaUGCGc-- -3'
miRNA:   3'- gCGGGC-------UGCGUCGCCGc-UC-ACGCacu -5'
5109 3' -61.2 NC_001798.1 + 56273 0.66 0.717699
Target:  5'- cCGCagCCGACGaUAGCGcacCGAGgagGCGUGGg -3'
miRNA:   3'- -GCG--GGCUGC-GUCGCc--GCUCa--CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 51679 0.66 0.717699
Target:  5'- cCGCCaGACGCuGCagcagGGCGAG-GCGcUGGc -3'
miRNA:   3'- -GCGGgCUGCGuCG-----CCGCUCaCGC-ACU- -5'
5109 3' -61.2 NC_001798.1 + 2665 0.66 0.717699
Target:  5'- gCGCCucccgCGGCGCGGaGGCGGGcGCGg-- -3'
miRNA:   3'- -GCGG-----GCUGCGUCgCCGCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 147992 0.66 0.717699
Target:  5'- uGCCCGGCcaCAGCcGUGGGUGUGg-- -3'
miRNA:   3'- gCGGGCUGc-GUCGcCGCUCACGCacu -5'
5109 3' -61.2 NC_001798.1 + 122069 0.66 0.717699
Target:  5'- gCGUCgGACGCGGaGGCG-GUGC-UGGc -3'
miRNA:   3'- -GCGGgCUGCGUCgCCGCuCACGcACU- -5'
5109 3' -61.2 NC_001798.1 + 120381 0.66 0.708128
Target:  5'- uGCaCGACGCAGCGGgCGAuGUccGCGgGGg -3'
miRNA:   3'- gCGgGCUGCGUCGCC-GCU-CA--CGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 67675 0.66 0.707168
Target:  5'- gGCUCgGACGCgaugaacggaaacAGCGGCGGGccCGUGGg -3'
miRNA:   3'- gCGGG-CUGCG-------------UCGCCGCUCacGCACU- -5'
5109 3' -61.2 NC_001798.1 + 110991 0.66 0.698498
Target:  5'- aCGCCCGucagGCGC-GCGGUa--UGCGUGGc -3'
miRNA:   3'- -GCGGGC----UGCGuCGCCGcucACGCACU- -5'
5109 3' -61.2 NC_001798.1 + 79267 0.66 0.698498
Target:  5'- aGUUCGACGCGGCGGCc---GCG-GAc -3'
miRNA:   3'- gCGGGCUGCGUCGCCGcucaCGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 86446 0.66 0.698498
Target:  5'- aGCCCGGgGaCGGgGGCcGGUuCGUGAg -3'
miRNA:   3'- gCGGGCUgC-GUCgCCGcUCAcGCACU- -5'
5109 3' -61.2 NC_001798.1 + 117678 0.66 0.698498
Target:  5'- aCGCgCGGC-CGGCGGCGuGUacGCGgggGAc -3'
miRNA:   3'- -GCGgGCUGcGUCGCCGCuCA--CGCa--CU- -5'
5109 3' -61.2 NC_001798.1 + 139336 0.66 0.697532
Target:  5'- gCGCCCGcGCGCgcugugcggccauGGCGGCGuccgGCGggGAg -3'
miRNA:   3'- -GCGGGC-UGCG-------------UCGCCGCuca-CGCa-CU- -5'
5109 3' -61.2 NC_001798.1 + 142135 0.66 0.688816
Target:  5'- uGCCgGACGCGGCacaGGUG-GUGCacGUGu -3'
miRNA:   3'- gCGGgCUGCGUCG---CCGCuCACG--CACu -5'
5109 3' -61.2 NC_001798.1 + 51181 0.66 0.688816
Target:  5'- gGCCCGG-GCGGCGGCGcccccccgccGG-GCGUc- -3'
miRNA:   3'- gCGGGCUgCGUCGCCGC----------UCaCGCAcu -5'
5109 3' -61.2 NC_001798.1 + 79958 0.66 0.688816
Target:  5'- gCGUCCGGaGCGGCGGCGcc-GCGUc- -3'
miRNA:   3'- -GCGGGCUgCGUCGCCGCucaCGCAcu -5'
5109 3' -61.2 NC_001798.1 + 15440 0.66 0.688816
Target:  5'- gGCCCcggaguCGUggGGCGGgGGGUcGCGUGGg -3'
miRNA:   3'- gCGGGcu----GCG--UCGCCgCUCA-CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 66167 0.66 0.679091
Target:  5'- cCGCUCGACG-AGCGuGUucgGGGUGCuGUGGa -3'
miRNA:   3'- -GCGGGCUGCgUCGC-CG---CUCACG-CACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.