miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5110 3' -58.5 NC_001798.1 + 144150 1.07 0.002244
Target:  5'- gGAGAACACAUCCUCCCGCGGCGGCAGc -3'
miRNA:   3'- -CUCUUGUGUAGGAGGGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 5376 0.77 0.24456
Target:  5'- ---cGCGCGUCCgcgUCCGUGGCGGCGGc -3'
miRNA:   3'- cucuUGUGUAGGa--GGGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 153771 0.75 0.300234
Target:  5'- aGGGGGCGCugcggcccgcgcUCCUUgCGCGGCGGCGGc -3'
miRNA:   3'- -CUCUUGUGu-----------AGGAGgGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 84496 0.75 0.330078
Target:  5'- -cGAACGCGUCC-CCCG-GGCGGCc- -3'
miRNA:   3'- cuCUUGUGUAGGaGGGCgCCGCCGuc -5'
5110 3' -58.5 NC_001798.1 + 60862 0.75 0.330078
Target:  5'- cGGGAuCGCGUCCUCCgaaggGgGGCGGCGGc -3'
miRNA:   3'- -CUCUuGUGUAGGAGGg----CgCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 2754 0.75 0.330078
Target:  5'- aAGAGCAgGUCCg-CgGCGGCGGCGGc -3'
miRNA:   3'- cUCUUGUgUAGGagGgCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 23656 0.75 0.322778
Target:  5'- uGGAGCGCcgCCgggCCCGCG-CGGCGGu -3'
miRNA:   3'- cUCUUGUGuaGGa--GGGCGCcGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 51167 0.74 0.384537
Target:  5'- -cGAcGCGCGUCCgaggCCCG-GGCGGCGGc -3'
miRNA:   3'- cuCU-UGUGUAGGa---GGGCgCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 2647 0.74 0.352702
Target:  5'- cGGGGcucuugcgcuuGCGCG-CCUCCCGCGGCgcggaGGCGGg -3'
miRNA:   3'- -CUCU-----------UGUGUaGGAGGGCGCCG-----CCGUC- -5'
5110 3' -58.5 NC_001798.1 + 2384 0.74 0.360483
Target:  5'- cGGGGCGCAguaggCCUCCaggGCGGCGGCc- -3'
miRNA:   3'- cUCUUGUGUa----GGAGGg--CGCCGCCGuc -5'
5110 3' -58.5 NC_001798.1 + 49822 0.74 0.3597
Target:  5'- -cGAGCACcugaaCCUCCCgcuggugcgaaguGCGGCGGCGGa -3'
miRNA:   3'- cuCUUGUGua---GGAGGG-------------CGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 42157 0.73 0.401152
Target:  5'- gGAGGACGCGgaUCUCCCGCGGgGccGCGGa -3'
miRNA:   3'- -CUCUUGUGUa-GGAGGGCGCCgC--CGUC- -5'
5110 3' -58.5 NC_001798.1 + 77176 0.73 0.415629
Target:  5'- cGGGAGCGCcgCCgucgcgacggcaagUCCCGCGGCGaCGGu -3'
miRNA:   3'- -CUCUUGUGuaGG--------------AGGGCGCCGCcGUC- -5'
5110 3' -58.5 NC_001798.1 + 105175 0.72 0.453632
Target:  5'- -uGAAC-C-UCCaUCuCCGCGGCGGCGGg -3'
miRNA:   3'- cuCUUGuGuAGG-AG-GGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 101842 0.72 0.462738
Target:  5'- gGGGGAgGCGUgggUCCCgGCGGCGGCGGa -3'
miRNA:   3'- -CUCUUgUGUAgg-AGGG-CGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 60228 0.72 0.481232
Target:  5'- uGGAcgACGCGcCCUCCuCGCgGGCGGCAa -3'
miRNA:   3'- cUCU--UGUGUaGGAGG-GCG-CCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 88058 0.72 0.453632
Target:  5'- gGGGGGCGggcuCGUCC-CCUGgGGCGGCGGc -3'
miRNA:   3'- -CUCUUGU----GUAGGaGGGCgCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 96686 0.71 0.509624
Target:  5'- uGGAGCGCGUCCgggaguuuaUgGUGGCGGCGGu -3'
miRNA:   3'- cUCUUGUGUAGGag-------GgCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 153216 0.71 0.528936
Target:  5'- uAGAcCGCccgacggCCcgggCCCGCGGCGGCGGa -3'
miRNA:   3'- cUCUuGUGua-----GGa---GGGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 18270 0.71 0.538693
Target:  5'- cAGGuACGCAUCCU-CCGCGGgGGUAu -3'
miRNA:   3'- cUCU-UGUGUAGGAgGGCGCCgCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.