miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5110 5' -55.5 NC_001798.1 + 2470 0.66 0.936865
Target:  5'- gGUCggGGCccucggcggGCCGGCgGGUCAgcg-CCGCg -3'
miRNA:   3'- -CAGa-CCG---------UGGCUG-CCAGUaugaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 102791 0.66 0.936865
Target:  5'- uGUCaUGGCAcCCGGggcgcCGGUUuuAUAC-CCGCg -3'
miRNA:   3'- -CAG-ACCGU-GGCU-----GCCAG--UAUGaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 5727 0.66 0.936865
Target:  5'- -gCUGGCGCCcugcccggGGCccgcGUCAUcccgcGCUCCGCc -3'
miRNA:   3'- caGACCGUGG--------CUGc---CAGUA-----UGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 5181 0.66 0.931909
Target:  5'- -cCUGGCgGCCGcguCGGUagcCGcGCUCCGUg -3'
miRNA:   3'- caGACCG-UGGCu--GCCA---GUaUGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 93280 0.66 0.931909
Target:  5'- ---cGGCGCCGuCGGggCGUACcuggcgcgcgCCGCg -3'
miRNA:   3'- cagaCCGUGGCuGCCa-GUAUGa---------GGCG- -5'
5110 5' -55.5 NC_001798.1 + 24771 0.66 0.926715
Target:  5'- -cCUGGCugCGcgagcuGCGGuUCGUGCgcgaCGCg -3'
miRNA:   3'- caGACCGugGC------UGCC-AGUAUGag--GCG- -5'
5110 5' -55.5 NC_001798.1 + 60154 0.66 0.926715
Target:  5'- cGUCuUGGCGuuGGCGGcCGcuugGC-CCGCc -3'
miRNA:   3'- -CAG-ACCGUggCUGCCaGUa---UGaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 91379 0.66 0.926715
Target:  5'- ---cGGCacaaaacaucGCCGcCGGUCGUugUCCuGCu -3'
miRNA:   3'- cagaCCG----------UGGCuGCCAGUAugAGG-CG- -5'
5110 5' -55.5 NC_001798.1 + 15964 0.66 0.925111
Target:  5'- ---cGGCAgaccccgacgucuuCCGugGGUCGUGCcaUCCGa -3'
miRNA:   3'- cagaCCGU--------------GGCugCCAGUAUG--AGGCg -5'
5110 5' -55.5 NC_001798.1 + 79735 0.66 0.921284
Target:  5'- ---cGGCcCCGACGGUCAcggccauguacgUGCUgaCCGUc -3'
miRNA:   3'- cagaCCGuGGCUGCCAGU------------AUGA--GGCG- -5'
5110 5' -55.5 NC_001798.1 + 110887 0.66 0.921284
Target:  5'- cGUCcaGGUAcCCGGCGGUucgCGUGCggccagCCGCc -3'
miRNA:   3'- -CAGa-CCGU-GGCUGCCA---GUAUGa-----GGCG- -5'
5110 5' -55.5 NC_001798.1 + 116759 0.66 0.921284
Target:  5'- --aUGGCcgacGCaCGACGGcgCugcuGUGCUCCGCg -3'
miRNA:   3'- cagACCG----UG-GCUGCCa-G----UAUGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 102275 0.66 0.915616
Target:  5'- gGUCcGGCucgucacgGCCG-CaGUCGUACUCCGg -3'
miRNA:   3'- -CAGaCCG--------UGGCuGcCAGUAUGAGGCg -5'
5110 5' -55.5 NC_001798.1 + 24460 0.67 0.909712
Target:  5'- ---cGGCGCCG-CGGggGUGCUcgCCGCc -3'
miRNA:   3'- cagaCCGUGGCuGCCagUAUGA--GGCG- -5'
5110 5' -55.5 NC_001798.1 + 43228 0.67 0.903573
Target:  5'- gGUUUGG-ACCGACGcGUCcUGCaugagagCCGCg -3'
miRNA:   3'- -CAGACCgUGGCUGC-CAGuAUGa------GGCG- -5'
5110 5' -55.5 NC_001798.1 + 97127 0.67 0.903573
Target:  5'- -gCUGGCGuCCGGCGaUCGcGC-CCGCc -3'
miRNA:   3'- caGACCGU-GGCUGCcAGUaUGaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 42625 0.67 0.897201
Target:  5'- cGUCcgggagGGgGCCGugGGUCGUguccauggGgUCCGUg -3'
miRNA:   3'- -CAGa-----CCgUGGCugCCAGUA--------UgAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 147259 0.67 0.8906
Target:  5'- ----cGCGCCGGCGG-CGU-UUCCGCg -3'
miRNA:   3'- cagacCGUGGCUGCCaGUAuGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 103312 0.67 0.8906
Target:  5'- ---cGGCGCUGGCGGcCGUcucgaggacgcGCUCCaGCu -3'
miRNA:   3'- cagaCCGUGGCUGCCaGUA-----------UGAGG-CG- -5'
5110 5' -55.5 NC_001798.1 + 119426 0.67 0.889928
Target:  5'- -cCUGGCcCCGGCGGUUcggguguGUACguucgacggcgCCGCc -3'
miRNA:   3'- caGACCGuGGCUGCCAG-------UAUGa----------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.