Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5110 | 5' | -55.5 | NC_001798.1 | + | 102791 | 0.66 | 0.936865 |
Target: 5'- uGUCaUGGCAcCCGGggcgcCGGUUuuAUAC-CCGCg -3' miRNA: 3'- -CAG-ACCGU-GGCU-----GCCAG--UAUGaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 5727 | 0.66 | 0.936865 |
Target: 5'- -gCUGGCGCCcugcccggGGCccgcGUCAUcccgcGCUCCGCc -3' miRNA: 3'- caGACCGUGG--------CUGc---CAGUA-----UGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 2470 | 0.66 | 0.936865 |
Target: 5'- gGUCggGGCccucggcggGCCGGCgGGUCAgcg-CCGCg -3' miRNA: 3'- -CAGa-CCG---------UGGCUG-CCAGUaugaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 5181 | 0.66 | 0.931909 |
Target: 5'- -cCUGGCgGCCGcguCGGUagcCGcGCUCCGUg -3' miRNA: 3'- caGACCG-UGGCu--GCCA---GUaUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 93280 | 0.66 | 0.931909 |
Target: 5'- ---cGGCGCCGuCGGggCGUACcuggcgcgcgCCGCg -3' miRNA: 3'- cagaCCGUGGCuGCCa-GUAUGa---------GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 91379 | 0.66 | 0.926715 |
Target: 5'- ---cGGCacaaaacaucGCCGcCGGUCGUugUCCuGCu -3' miRNA: 3'- cagaCCG----------UGGCuGCCAGUAugAGG-CG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 60154 | 0.66 | 0.926715 |
Target: 5'- cGUCuUGGCGuuGGCGGcCGcuugGC-CCGCc -3' miRNA: 3'- -CAG-ACCGUggCUGCCaGUa---UGaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 24771 | 0.66 | 0.926715 |
Target: 5'- -cCUGGCugCGcgagcuGCGGuUCGUGCgcgaCGCg -3' miRNA: 3'- caGACCGugGC------UGCC-AGUAUGag--GCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 15964 | 0.66 | 0.925111 |
Target: 5'- ---cGGCAgaccccgacgucuuCCGugGGUCGUGCcaUCCGa -3' miRNA: 3'- cagaCCGU--------------GGCugCCAGUAUG--AGGCg -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 110887 | 0.66 | 0.921284 |
Target: 5'- cGUCcaGGUAcCCGGCGGUucgCGUGCggccagCCGCc -3' miRNA: 3'- -CAGa-CCGU-GGCUGCCA---GUAUGa-----GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 79735 | 0.66 | 0.921284 |
Target: 5'- ---cGGCcCCGACGGUCAcggccauguacgUGCUgaCCGUc -3' miRNA: 3'- cagaCCGuGGCUGCCAGU------------AUGA--GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 116759 | 0.66 | 0.921284 |
Target: 5'- --aUGGCcgacGCaCGACGGcgCugcuGUGCUCCGCg -3' miRNA: 3'- cagACCG----UG-GCUGCCa-G----UAUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 102275 | 0.66 | 0.915616 |
Target: 5'- gGUCcGGCucgucacgGCCG-CaGUCGUACUCCGg -3' miRNA: 3'- -CAGaCCG--------UGGCuGcCAGUAUGAGGCg -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 24460 | 0.67 | 0.909712 |
Target: 5'- ---cGGCGCCG-CGGggGUGCUcgCCGCc -3' miRNA: 3'- cagaCCGUGGCuGCCagUAUGA--GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 43228 | 0.67 | 0.903573 |
Target: 5'- gGUUUGG-ACCGACGcGUCcUGCaugagagCCGCg -3' miRNA: 3'- -CAGACCgUGGCUGC-CAGuAUGa------GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 97127 | 0.67 | 0.903573 |
Target: 5'- -gCUGGCGuCCGGCGaUCGcGC-CCGCc -3' miRNA: 3'- caGACCGU-GGCUGCcAGUaUGaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 42625 | 0.67 | 0.897201 |
Target: 5'- cGUCcgggagGGgGCCGugGGUCGUguccauggGgUCCGUg -3' miRNA: 3'- -CAGa-----CCgUGGCugCCAGUA--------UgAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 147259 | 0.67 | 0.8906 |
Target: 5'- ----cGCGCCGGCGG-CGU-UUCCGCg -3' miRNA: 3'- cagacCGUGGCUGCCaGUAuGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 103312 | 0.67 | 0.8906 |
Target: 5'- ---cGGCGCUGGCGGcCGUcucgaggacgcGCUCCaGCu -3' miRNA: 3'- cagaCCGUGGCUGCCaGUA-----------UGAGG-CG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 119426 | 0.67 | 0.889928 |
Target: 5'- -cCUGGCcCCGGCGGUUcggguguGUACguucgacggcgCCGCc -3' miRNA: 3'- caGACCGuGGCUGCCAG-------UAUGa----------GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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