Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 154179 | 0.66 | 0.662268 |
Target: 5'- cCCGGaGCCGgagcGCGUCgGGgCGGGAg-- -3' miRNA: 3'- -GGUC-CGGCa---CGCGGaCCgGCCCUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 97476 | 0.66 | 0.662268 |
Target: 5'- -gGGGCCGgcggcGCGaCCgggggGGCCGaGGA-GGa -3' miRNA: 3'- ggUCCGGCa----CGC-GGa----CCGGC-CCUaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 146297 | 0.66 | 0.662268 |
Target: 5'- gCGGGgaGUGgGC--GGCCGGGcgGGa -3' miRNA: 3'- gGUCCggCACgCGgaCCGGCCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 3810 | 0.66 | 0.662268 |
Target: 5'- aCCGGGCCcgcgccuccuccGccucggGCGCCccccagaGGCCGGGgcGGc -3' miRNA: 3'- -GGUCCGG------------Ca-----CGCGGa------CCGGCCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 32307 | 0.66 | 0.662268 |
Target: 5'- cCCGcGCUGcUGCGCCgcgggGGCCGaGGAa-- -3' miRNA: 3'- -GGUcCGGC-ACGCGGa----CCGGC-CCUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 40494 | 0.66 | 0.662268 |
Target: 5'- gCCu-GCC-UGUGCUgGGCCGGGGgagGGg -3' miRNA: 3'- -GGucCGGcACGCGGaCCGGCCCUa--CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 122212 | 0.66 | 0.662268 |
Target: 5'- gCuGGUCGaGUGgCUGGaCCGcGGGUGGg -3' miRNA: 3'- gGuCCGGCaCGCgGACC-GGC-CCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 134971 | 0.66 | 0.662268 |
Target: 5'- cCCAuGCCGcgugccuggGgGCCUGGCCcGcGGUGGg -3' miRNA: 3'- -GGUcCGGCa--------CgCGGACCGGcC-CUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 111897 | 0.66 | 0.659374 |
Target: 5'- gCCGGGggagGUGCGCCUGGgCCagggcgaauacguaGGGGgagGGg -3' miRNA: 3'- -GGUCCgg--CACGCGGACC-GG--------------CCCUa--CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 151261 | 0.66 | 0.658409 |
Target: 5'- uCCAcGGCCGUGCcggcccgcacggccGCCUcGGCCuccacgcGGGuccgGGg -3' miRNA: 3'- -GGU-CCGGCACG--------------CGGA-CCGG-------CCCua--CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 130513 | 0.66 | 0.652615 |
Target: 5'- gCCAGGCCGacgaUGCCggUGGC-GGcGAUGGc -3' miRNA: 3'- -GGUCCGGCac--GCGG--ACCGgCC-CUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 31668 | 0.66 | 0.652615 |
Target: 5'- gCCGGGCCc-GCGCCgcccGCCGugccGGUGGa -3' miRNA: 3'- -GGUCCGGcaCGCGGac--CGGCc---CUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 118924 | 0.66 | 0.652615 |
Target: 5'- gCCAGGCgacggaCGUGCGCCUGGaguCGcuGGAc-- -3' miRNA: 3'- -GGUCCG------GCACGCGGACCg--GC--CCUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 138559 | 0.66 | 0.642947 |
Target: 5'- aCCAGGCgGU-CGCC-GGUCcacaGGGggGGg -3' miRNA: 3'- -GGUCCGgCAcGCGGaCCGG----CCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 39532 | 0.66 | 0.642947 |
Target: 5'- uCCGcGCC--GCGCCUcGCCGuGGGUGGc -3' miRNA: 3'- -GGUcCGGcaCGCGGAcCGGC-CCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 113128 | 0.66 | 0.642947 |
Target: 5'- aCgAGGCC--GCGUgUGGCgGGGA-GGa -3' miRNA: 3'- -GgUCCGGcaCGCGgACCGgCCCUaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 24663 | 0.66 | 0.642947 |
Target: 5'- aCCuggcGGCCGUGCcggGgCUGGCCGGa---- -3' miRNA: 3'- -GGu---CCGGCACG---CgGACCGGCCcuacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 6343 | 0.66 | 0.642947 |
Target: 5'- aCGGGCCGggGgGaCgGGCCGGGG-GGn -3' miRNA: 3'- gGUCCGGCa-CgCgGaCCGGCCCUaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 107642 | 0.66 | 0.642947 |
Target: 5'- gUCGGGUgucgagacgcccUGuUGCGCCUcaccGCCGGGAUGa -3' miRNA: 3'- -GGUCCG------------GC-ACGCGGAc---CGGCCCUACc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 76864 | 0.66 | 0.640046 |
Target: 5'- uCC-GGCCGUGCuggcgacccugcggGCCUcccuGCCcgcGGGGUGGa -3' miRNA: 3'- -GGuCCGGCACG--------------CGGAc---CGG---CCCUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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