miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 154179 0.66 0.662268
Target:  5'- cCCGGaGCCGgagcGCGUCgGGgCGGGAg-- -3'
miRNA:   3'- -GGUC-CGGCa---CGCGGaCCgGCCCUacc -5'
5111 3' -62.8 NC_001798.1 + 97476 0.66 0.662268
Target:  5'- -gGGGCCGgcggcGCGaCCgggggGGCCGaGGA-GGa -3'
miRNA:   3'- ggUCCGGCa----CGC-GGa----CCGGC-CCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 146297 0.66 0.662268
Target:  5'- gCGGGgaGUGgGC--GGCCGGGcgGGa -3'
miRNA:   3'- gGUCCggCACgCGgaCCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 3810 0.66 0.662268
Target:  5'- aCCGGGCCcgcgccuccuccGccucggGCGCCccccagaGGCCGGGgcGGc -3'
miRNA:   3'- -GGUCCGG------------Ca-----CGCGGa------CCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 32307 0.66 0.662268
Target:  5'- cCCGcGCUGcUGCGCCgcgggGGCCGaGGAa-- -3'
miRNA:   3'- -GGUcCGGC-ACGCGGa----CCGGC-CCUacc -5'
5111 3' -62.8 NC_001798.1 + 40494 0.66 0.662268
Target:  5'- gCCu-GCC-UGUGCUgGGCCGGGGgagGGg -3'
miRNA:   3'- -GGucCGGcACGCGGaCCGGCCCUa--CC- -5'
5111 3' -62.8 NC_001798.1 + 122212 0.66 0.662268
Target:  5'- gCuGGUCGaGUGgCUGGaCCGcGGGUGGg -3'
miRNA:   3'- gGuCCGGCaCGCgGACC-GGC-CCUACC- -5'
5111 3' -62.8 NC_001798.1 + 134971 0.66 0.662268
Target:  5'- cCCAuGCCGcgugccuggGgGCCUGGCCcGcGGUGGg -3'
miRNA:   3'- -GGUcCGGCa--------CgCGGACCGGcC-CUACC- -5'
5111 3' -62.8 NC_001798.1 + 111897 0.66 0.659374
Target:  5'- gCCGGGggagGUGCGCCUGGgCCagggcgaauacguaGGGGgagGGg -3'
miRNA:   3'- -GGUCCgg--CACGCGGACC-GG--------------CCCUa--CC- -5'
5111 3' -62.8 NC_001798.1 + 151261 0.66 0.658409
Target:  5'- uCCAcGGCCGUGCcggcccgcacggccGCCUcGGCCuccacgcGGGuccgGGg -3'
miRNA:   3'- -GGU-CCGGCACG--------------CGGA-CCGG-------CCCua--CC- -5'
5111 3' -62.8 NC_001798.1 + 130513 0.66 0.652615
Target:  5'- gCCAGGCCGacgaUGCCggUGGC-GGcGAUGGc -3'
miRNA:   3'- -GGUCCGGCac--GCGG--ACCGgCC-CUACC- -5'
5111 3' -62.8 NC_001798.1 + 31668 0.66 0.652615
Target:  5'- gCCGGGCCc-GCGCCgcccGCCGugccGGUGGa -3'
miRNA:   3'- -GGUCCGGcaCGCGGac--CGGCc---CUACC- -5'
5111 3' -62.8 NC_001798.1 + 118924 0.66 0.652615
Target:  5'- gCCAGGCgacggaCGUGCGCCUGGaguCGcuGGAc-- -3'
miRNA:   3'- -GGUCCG------GCACGCGGACCg--GC--CCUacc -5'
5111 3' -62.8 NC_001798.1 + 138559 0.66 0.642947
Target:  5'- aCCAGGCgGU-CGCC-GGUCcacaGGGggGGg -3'
miRNA:   3'- -GGUCCGgCAcGCGGaCCGG----CCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 39532 0.66 0.642947
Target:  5'- uCCGcGCC--GCGCCUcGCCGuGGGUGGc -3'
miRNA:   3'- -GGUcCGGcaCGCGGAcCGGC-CCUACC- -5'
5111 3' -62.8 NC_001798.1 + 113128 0.66 0.642947
Target:  5'- aCgAGGCC--GCGUgUGGCgGGGA-GGa -3'
miRNA:   3'- -GgUCCGGcaCGCGgACCGgCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 24663 0.66 0.642947
Target:  5'- aCCuggcGGCCGUGCcggGgCUGGCCGGa---- -3'
miRNA:   3'- -GGu---CCGGCACG---CgGACCGGCCcuacc -5'
5111 3' -62.8 NC_001798.1 + 6343 0.66 0.642947
Target:  5'- aCGGGCCGggGgGaCgGGCCGGGG-GGn -3'
miRNA:   3'- gGUCCGGCa-CgCgGaCCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 107642 0.66 0.642947
Target:  5'- gUCGGGUgucgagacgcccUGuUGCGCCUcaccGCCGGGAUGa -3'
miRNA:   3'- -GGUCCG------------GC-ACGCGGAc---CGGCCCUACc -5'
5111 3' -62.8 NC_001798.1 + 76864 0.66 0.640046
Target:  5'- uCC-GGCCGUGCuggcgacccugcggGCCUcccuGCCcgcGGGGUGGa -3'
miRNA:   3'- -GGuCCGGCACG--------------CGGAc---CGG---CCCUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.