miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 75434 0.66 0.633273
Target:  5'- aCgGGGCCcgcaCGCauacgcaGGCCGGGGUGGc -3'
miRNA:   3'- -GgUCCGGcac-GCGga-----CCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 149150 0.66 0.633273
Target:  5'- cCCcuGCCcccgagGCGCCUcGGCCGGugguccGGUGGg -3'
miRNA:   3'- -GGucCGGca----CGCGGA-CCGGCC------CUACC- -5'
5111 3' -62.8 NC_001798.1 + 4352 0.66 0.633273
Target:  5'- --cGGCCGaGCGCC-GGCgGGGGg-- -3'
miRNA:   3'- gguCCGGCaCGCGGaCCGgCCCUacc -5'
5111 3' -62.8 NC_001798.1 + 2239 0.66 0.621663
Target:  5'- gCGGGCCGaaggcggcgggcGCGCC--GCCGGGGggcgGGg -3'
miRNA:   3'- gGUCCGGCa-----------CGCGGacCGGCCCUa---CC- -5'
5111 3' -62.8 NC_001798.1 + 132207 0.66 0.613927
Target:  5'- -gGGaGCUGgaggcGCGCCUGGCCGGcGGa-- -3'
miRNA:   3'- ggUC-CGGCa----CGCGGACCGGCC-CUacc -5'
5111 3' -62.8 NC_001798.1 + 78122 0.67 0.60427
Target:  5'- aCgAGGCCGUgggGCGCCUGGC--GGAc-- -3'
miRNA:   3'- -GgUCCGGCA---CGCGGACCGgcCCUacc -5'
5111 3' -62.8 NC_001798.1 + 15268 0.67 0.60427
Target:  5'- aCGGGCgGUGCcCCgGGuuCCGGGcGUGGc -3'
miRNA:   3'- gGUCCGgCACGcGGaCC--GGCCC-UACC- -5'
5111 3' -62.8 NC_001798.1 + 148083 0.67 0.594631
Target:  5'- aCGGGCCGgGgGCCggGGCCgcuaGGGAa-- -3'
miRNA:   3'- gGUCCGGCaCgCGGa-CCGG----CCCUacc -5'
5111 3' -62.8 NC_001798.1 + 96335 0.67 0.594631
Target:  5'- uCCAGGUgcgCGUGCugcggcggcaCCUgcGGCCGGGGcUGGa -3'
miRNA:   3'- -GGUCCG---GCACGc---------GGA--CCGGCCCU-ACC- -5'
5111 3' -62.8 NC_001798.1 + 25691 0.67 0.594631
Target:  5'- gCGGGCCcgccacgGcCGCCUGGgCGGGcaacUGGa -3'
miRNA:   3'- gGUCCGGca-----C-GCGGACCgGCCCu---ACC- -5'
5111 3' -62.8 NC_001798.1 + 34876 0.67 0.593668
Target:  5'- cCCGGcGCCGgGCGgCUacccgggacccccGGCCGGGAa-- -3'
miRNA:   3'- -GGUC-CGGCaCGCgGA-------------CCGGCCCUacc -5'
5111 3' -62.8 NC_001798.1 + 108832 0.67 0.585016
Target:  5'- aCguGGCCcguggGCGUCUGGacgaCGGGcgGGc -3'
miRNA:   3'- -GguCCGGca---CGCGGACCg---GCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 152500 0.67 0.575432
Target:  5'- cCCAauaGCCGcGCGCCccGGCgGGGgcGGa -3'
miRNA:   3'- -GGUc--CGGCaCGCGGa-CCGgCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 24805 0.67 0.575432
Target:  5'- gCUGGuGCUGaUGCGCCUGcGCgGGGAccugcgcgUGGc -3'
miRNA:   3'- -GGUC-CGGC-ACGCGGAC-CGgCCCU--------ACC- -5'
5111 3' -62.8 NC_001798.1 + 20888 0.67 0.574476
Target:  5'- aCGGGgCGUcuGCGCUUccgugaacccgggGGUgGGGAUGGg -3'
miRNA:   3'- gGUCCgGCA--CGCGGA-------------CCGgCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 135190 0.67 0.569699
Target:  5'- uCCAGGCCcaGCuCCUGGCCgcccucgcgggccucGGGGaGGc -3'
miRNA:   3'- -GGUCCGGcaCGcGGACCGG---------------CCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 101803 0.67 0.565884
Target:  5'- uCCGcGCCGgGCGCCUcgGGuuGGGGUa- -3'
miRNA:   3'- -GGUcCGGCaCGCGGA--CCggCCCUAcc -5'
5111 3' -62.8 NC_001798.1 + 31237 0.67 0.565884
Target:  5'- gCAGcGgCG-GCGCCccguugcgGGCgGGGGUGGg -3'
miRNA:   3'- gGUC-CgGCaCGCGGa-------CCGgCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 12308 0.67 0.565884
Target:  5'- gCCAGGCCcUGCagcgagcgGCCgGGCauacCGGGAUcGGa -3'
miRNA:   3'- -GGUCCGGcACG--------CGGaCCG----GCCCUA-CC- -5'
5111 3' -62.8 NC_001798.1 + 69134 0.67 0.563027
Target:  5'- cCCAGGCCucgGCcagucgcucggucuGCC-GGCCGGGcgGa -3'
miRNA:   3'- -GGUCCGGca-CG--------------CGGaCCGGCCCuaCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.