miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5112 5' -60.9 NC_001798.1 + 101799 0.66 0.752631
Target:  5'- gGCCuCCGCGCcgGGCgccucgGGUUGGGGUa- -3'
miRNA:   3'- gCGG-GGCGCGaaCUG------CCAGUCCCAgc -5'
5112 5' -60.9 NC_001798.1 + 30830 0.66 0.752631
Target:  5'- gGCCCCGCGCUcccugucgcUGGgGGgacaCAcGGUCc -3'
miRNA:   3'- gCGGGGCGCGA---------ACUgCCa---GUcCCAGc -5'
5112 5' -60.9 NC_001798.1 + 153781 0.66 0.752631
Target:  5'- gCGgCCCGCGCUccuugcgcGGCGGcggCGGGGggcaggCGg -3'
miRNA:   3'- -GCgGGGCGCGAa-------CUGCCa--GUCCCa-----GC- -5'
5112 5' -60.9 NC_001798.1 + 10356 0.66 0.74709
Target:  5'- aCGCCCgCGuCGuCUucuucgucguagucgUcGGgGGUCGGGGUCGg -3'
miRNA:   3'- -GCGGG-GC-GC-GA---------------A-CUgCCAGUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 24507 0.66 0.743378
Target:  5'- cCGCCuCCGCGC----CGGcCGGGGcCGa -3'
miRNA:   3'- -GCGG-GGCGCGaacuGCCaGUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 36012 0.66 0.737782
Target:  5'- aCGCCCCccaccGCGcCUuggcuguuuggggggUGGCGG-CGGuGGUCGg -3'
miRNA:   3'- -GCGGGG-----CGC-GA---------------ACUGCCaGUC-CCAGC- -5'
5112 5' -60.9 NC_001798.1 + 86116 0.66 0.734035
Target:  5'- aCGCCcgCCGCGCc--GCGGUCAGcGaGUCc -3'
miRNA:   3'- -GCGG--GGCGCGaacUGCCAGUC-C-CAGc -5'
5112 5' -60.9 NC_001798.1 + 10880 0.66 0.72839
Target:  5'- gGCCCCGCGagccauguucgggUGGCaggagccgucGGUCGGGGcagaUCGg -3'
miRNA:   3'- gCGGGGCGCga-----------ACUG----------CCAGUCCC----AGC- -5'
5112 5' -60.9 NC_001798.1 + 53962 0.66 0.724611
Target:  5'- gGCCCUGCGggcGGCGGUCAGcgacGUCc -3'
miRNA:   3'- gCGGGGCGCgaaCUGCCAGUCc---CAGc -5'
5112 5' -60.9 NC_001798.1 + 134994 0.66 0.705552
Target:  5'- uGgCCCGCGgUgGGCGc-CAGGGUCGu -3'
miRNA:   3'- gCgGGGCGCgAaCUGCcaGUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 51414 0.66 0.705552
Target:  5'- cCGCCgUCGCGCacgaUGACGGcccCGGGGcgCGg -3'
miRNA:   3'- -GCGG-GGCGCGa---ACUGCCa--GUCCCa-GC- -5'
5112 5' -60.9 NC_001798.1 + 132136 0.66 0.703633
Target:  5'- gGCCCUGCGCcgccgggggccGGCGGgCGGGG-CGc -3'
miRNA:   3'- gCGGGGCGCGaa---------CUGCCaGUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 147173 0.66 0.695933
Target:  5'- cCGCCCgGCGCcgGGCGGa-AGGcGUCc -3'
miRNA:   3'- -GCGGGgCGCGaaCUGCCagUCC-CAGc -5'
5112 5' -60.9 NC_001798.1 + 102198 0.67 0.686266
Target:  5'- aGCCUgGCGCgcGGCGcGcCGGGaGUCGa -3'
miRNA:   3'- gCGGGgCGCGaaCUGC-CaGUCC-CAGC- -5'
5112 5' -60.9 NC_001798.1 + 2552 0.67 0.686266
Target:  5'- gGCCCC-CGCgggaggGGCGGccgCGGGG-CGg -3'
miRNA:   3'- gCGGGGcGCGaa----CUGCCa--GUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 2436 0.67 0.685296
Target:  5'- gGCCCCG-GCggcUGGCGG-CGccagccgcccugcGGGUCGg -3'
miRNA:   3'- gCGGGGCgCGa--ACUGCCaGU-------------CCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 15332 0.67 0.683357
Target:  5'- gGCCCCgGCGCgguagcggggggcgaGGCGGUgAGGGgggaaUCGg -3'
miRNA:   3'- gCGGGG-CGCGaa-------------CUGCCAgUCCC-----AGC- -5'
5112 5' -60.9 NC_001798.1 + 102158 0.67 0.676557
Target:  5'- cCGCCCCcaccaGCGCcgUGAUGGUUucguGGGgccCGg -3'
miRNA:   3'- -GCGGGG-----CGCGa-ACUGCCAGu---CCCa--GC- -5'
5112 5' -60.9 NC_001798.1 + 93269 0.67 0.666815
Target:  5'- gCGgCCCGCGCc-GGCGccGUCGGGG-CGu -3'
miRNA:   3'- -GCgGGGCGCGaaCUGC--CAGUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 4840 0.67 0.666815
Target:  5'- gGCCgCGCgGCggggcGACGGUCcGGGuUCGg -3'
miRNA:   3'- gCGGgGCG-CGaa---CUGCCAGuCCC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.