miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 35568 0.73 0.313502
Target:  5'- cGGCCccggaGCCCGCGgcGCUGCUCG-GCugCg -3'
miRNA:   3'- aUUGG-----CGGGCGU--CGACGAGCgCGugG- -5'
5115 3' -60.4 NC_001798.1 + 150814 0.73 0.327827
Target:  5'- -cGCCGCCgcUGCuGCUGCUCcGCgggGCGCCa -3'
miRNA:   3'- auUGGCGG--GCGuCGACGAG-CG---CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 25193 0.72 0.34263
Target:  5'- -cGCCGCCgcCGCGGCcGC-CGCGCcCCg -3'
miRNA:   3'- auUGGCGG--GCGUCGaCGaGCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 25005 0.72 0.34263
Target:  5'- -cACCGUcgCCGCGGCcgacucGCUCGCcGCGCCc -3'
miRNA:   3'- auUGGCG--GGCGUCGa-----CGAGCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 28978 0.72 0.381711
Target:  5'- --uCCGCCCGCcccagggggcGGCgccgGCcaacCGCGCGCCg -3'
miRNA:   3'- auuGGCGGGCG----------UCGa---CGa---GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 28547 0.72 0.34263
Target:  5'- --cCCGCCCGCAGgUGUgcuucUCGcCGCGCg -3'
miRNA:   3'- auuGGCGGGCGUCgACG-----AGC-GCGUGg -5'
5115 3' -60.4 NC_001798.1 + 17707 0.72 0.381711
Target:  5'- cAGCCGCgccUCGUGGCucgUGCUgGCGUACCa -3'
miRNA:   3'- aUUGGCG---GGCGUCG---ACGAgCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 530 0.72 0.365727
Target:  5'- ---gCGCCCGCGGCcccgaGCUCGCaGCAgCCc -3'
miRNA:   3'- auugGCGGGCGUCGa----CGAGCG-CGU-GG- -5'
5115 3' -60.4 NC_001798.1 + 114279 0.72 0.34263
Target:  5'- cGGCCuGUCCGUGGCgUGCgUGUGCACCa -3'
miRNA:   3'- aUUGG-CGGGCGUCG-ACGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 78819 0.72 0.365727
Target:  5'- -cGCCGCCCGCGGCgacgGCcccggccccUgGCGCGgCa -3'
miRNA:   3'- auUGGCGGGCGUCGa---CG---------AgCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 24855 0.72 0.350211
Target:  5'- aGGCCG-CCGUGGCcGCcgUGCGCGCCg -3'
miRNA:   3'- aUUGGCgGGCGUCGaCGa-GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 78043 0.72 0.365727
Target:  5'- gAGCC-CCuggCGCGGCUGCU-GCGCAUCg -3'
miRNA:   3'- aUUGGcGG---GCGUCGACGAgCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 96932 0.72 0.35791
Target:  5'- -cGCCGCCCGCGcGCgagcGCUCuGUGUGCUg -3'
miRNA:   3'- auUGGCGGGCGU-CGa---CGAG-CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 4194 0.72 0.35791
Target:  5'- --cCCGCCCGCGGCgUGgUCuGCgGCGCUg -3'
miRNA:   3'- auuGGCGGGCGUCG-ACgAG-CG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 137942 0.72 0.373661
Target:  5'- cGGCCGCCCgguccgccGCGcGCUGCUCcCGCuCCa -3'
miRNA:   3'- aUUGGCGGG--------CGU-CGACGAGcGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 71830 0.71 0.389876
Target:  5'- -cGCUGUCCGC-GCUGCuccccgUCGgGCGCCu -3'
miRNA:   3'- auUGGCGGGCGuCGACG------AGCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 104604 0.71 0.389876
Target:  5'- gGGCCGCCgGUAGCaccccGUg-GCGCACCa -3'
miRNA:   3'- aUUGGCGGgCGUCGa----CGagCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 75762 0.71 0.389876
Target:  5'- gUGGCU-CCUGgAGC-GCUCGCGCGCCc -3'
miRNA:   3'- -AUUGGcGGGCgUCGaCGAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 94195 0.71 0.398155
Target:  5'- gGGCCGUgcccccugCUGCAGCUcCUCGCGCGgCg -3'
miRNA:   3'- aUUGGCG--------GGCGUCGAcGAGCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 77485 0.71 0.398155
Target:  5'- -cGCgGCCCGCGcgacgaccGCUGCUCGgGaaaGCCu -3'
miRNA:   3'- auUGgCGGGCGU--------CGACGAGCgCg--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.