miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 31048 0.66 0.924253
Target:  5'- gGGCGGggguCGGGCGGGggUCgGGCAcuAACc -3'
miRNA:   3'- gUUGCC----GCCCGCUCaaGGgUCGU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 97842 0.66 0.924253
Target:  5'- uGACGGCGGGCGcGggCaCGGuCAucGACa -3'
miRNA:   3'- gUUGCCGCCCGCuCaaGgGUC-GU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 2539 0.66 0.924253
Target:  5'- gGGCGGgGGGCGcGgcCCCcGCGGGa -3'
miRNA:   3'- gUUGCCgCCCGCuCaaGGGuCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 1409 0.66 0.924253
Target:  5'- gCAGCGGCGcGCccAGgcCCCAGCGcGCg -3'
miRNA:   3'- -GUUGCCGCcCGc-UCaaGGGUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 33280 0.66 0.924253
Target:  5'- gGugGGUGGGCGGGcUggCUGGCGggUa -3'
miRNA:   3'- gUugCCGCCCGCUC-AagGGUCGUuuG- -5'
5116 5' -55.6 NC_001798.1 + 43526 0.66 0.922599
Target:  5'- gCGGCGGCcgcgucucccgccaGGGCGGuUUCCCuggGGguGACg -3'
miRNA:   3'- -GUUGCCG--------------CCCGCUcAAGGG---UCguUUG- -5'
5116 5' -55.6 NC_001798.1 + 98630 0.66 0.918653
Target:  5'- gGGCGGCGuGGCcgcGAccgUCgCGGCGAACg -3'
miRNA:   3'- gUUGCCGC-CCG---CUca-AGgGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 58275 0.66 0.918653
Target:  5'- aCAGCaGCGGGUccguGAGgUCCCGGgGcGCg -3'
miRNA:   3'- -GUUGcCGCCCG----CUCaAGGGUCgUuUG- -5'
5116 5' -55.6 NC_001798.1 + 55993 0.66 0.918653
Target:  5'- -cGCGG-GGGCGAGgggCUGGUAGGCg -3'
miRNA:   3'- guUGCCgCCCGCUCaagGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 120384 0.66 0.918079
Target:  5'- aCGACGcaGCGGGCGAuGUccgcgggggccgaUCCC-GUGAGCg -3'
miRNA:   3'- -GUUGC--CGCCCGCU-CA-------------AGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 237 0.66 0.91281
Target:  5'- -cGCGGCaGGaCGGGga-CUAGCAGGCu -3'
miRNA:   3'- guUGCCGcCC-GCUCaagGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 86631 0.66 0.91281
Target:  5'- -uGCGGCaacgaguucgagGGGCGGGUcuguauagCCCuGCGGGCc -3'
miRNA:   3'- guUGCCG------------CCCGCUCAa-------GGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 93156 0.66 0.91281
Target:  5'- uGAUGGCGGGCGAcgccgCCCuGGCc--- -3'
miRNA:   3'- gUUGCCGCCCGCUcaa--GGG-UCGuuug -5'
5116 5' -55.6 NC_001798.1 + 30982 0.66 0.91281
Target:  5'- gGGCGGggguCGGGCGGGggUCgGGCGGGg -3'
miRNA:   3'- gUUGCC----GCCCGCUCaaGGgUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 31015 0.66 0.91281
Target:  5'- gGGCGGggguCGGGCGGGggUCgGGCGGGg -3'
miRNA:   3'- gUUGCC----GCCCGCUCaaGGgUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 38939 0.66 0.91281
Target:  5'- aGGC-GCGuGGCGAGguuUUCCAGCAcGGCg -3'
miRNA:   3'- gUUGcCGC-CCGCUCa--AGGGUCGU-UUG- -5'
5116 5' -55.6 NC_001798.1 + 125415 0.66 0.91281
Target:  5'- gCGACGGCcgagaagaGcGGCGAGUgcUCgCAGCAGu- -3'
miRNA:   3'- -GUUGCCG--------C-CCGCUCA--AGgGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 91576 0.66 0.906727
Target:  5'- -cGCGG-GGGCGccgcGGUUucuuuuuaucggCCCGGCAGGCc -3'
miRNA:   3'- guUGCCgCCCGC----UCAA------------GGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 150424 0.66 0.906727
Target:  5'- gCGGCGGCGGcGCGGGgcggacUCCGGaCGcGCg -3'
miRNA:   3'- -GUUGCCGCC-CGCUCaa----GGGUC-GUuUG- -5'
5116 5' -55.6 NC_001798.1 + 71403 0.66 0.906727
Target:  5'- uUggUGGCGGGgGug--CCCGcGCGGACg -3'
miRNA:   3'- -GuuGCCGCCCgCucaaGGGU-CGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.