miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 3' -56.8 NC_001798.1 + 77686 0.66 0.896136
Target:  5'- --gGCGGCCcag--CGCgCCCGGGGCa -3'
miRNA:   3'- gcaUGUCGGauguaGUG-GGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 5015 0.66 0.896136
Target:  5'- cCGcUGCuccGCCgACAUCGCCuccgaCCGGGGUGu -3'
miRNA:   3'- -GC-AUGu--CGGaUGUAGUGG-----GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 18083 0.66 0.896136
Target:  5'- gGUA-GGCC-ACGUCA-UCCGGGGCGu -3'
miRNA:   3'- gCAUgUCGGaUGUAGUgGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 44803 0.66 0.895484
Target:  5'- uCGUgaucGCAGUCUuccgucccCAUCGCCCCugcgaacccggagGGGGUGg -3'
miRNA:   3'- -GCA----UGUCGGAu-------GUAGUGGGG-------------UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 65640 0.66 0.889521
Target:  5'- --cACGGCCcgaACGUCGCUgugCCAGGGUu -3'
miRNA:   3'- gcaUGUCGGa--UGUAGUGG---GGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 135345 0.66 0.889521
Target:  5'- gCGUGCGacGCCUGCcccgCGCUCCGGcagcugcucGGCGg -3'
miRNA:   3'- -GCAUGU--CGGAUGua--GUGGGGUC---------CCGC- -5'
5117 3' -56.8 NC_001798.1 + 85001 0.66 0.888847
Target:  5'- gCGUGCgccccgcucgaccGGCCauggcgACGUcCGCCCCGGGGg- -3'
miRNA:   3'- -GCAUG-------------UCGGa-----UGUA-GUGGGGUCCCgc -5'
5117 3' -56.8 NC_001798.1 + 93483 0.66 0.882684
Target:  5'- aCGUGguGCCcgggUACGaggggCGCCCCAcGGCGc -3'
miRNA:   3'- -GCAUguCGG----AUGUa----GUGGGGUcCCGC- -5'
5117 3' -56.8 NC_001798.1 + 93268 0.66 0.882684
Target:  5'- --cGCGGCCcGCGccggCGCCgUCGGGGCGu -3'
miRNA:   3'- gcaUGUCGGaUGUa---GUGG-GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 105384 0.66 0.882684
Target:  5'- --gGCGGCCUggagggcgGCGUU-CUCCAGGGCc -3'
miRNA:   3'- gcaUGUCGGA--------UGUAGuGGGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 10568 0.66 0.882684
Target:  5'- -aUACAGUCccuCGUCGCCCgCGGGGa- -3'
miRNA:   3'- gcAUGUCGGau-GUAGUGGG-GUCCCgc -5'
5117 3' -56.8 NC_001798.1 + 29990 0.66 0.881988
Target:  5'- cCGUG-GGCCgUGCGcCGCCCCccgacccucugggGGGGCGa -3'
miRNA:   3'- -GCAUgUCGG-AUGUaGUGGGG-------------UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 121530 0.66 0.878475
Target:  5'- cCGUACAcggucgcggcgcugcGCCUgGCGUgggGCCCguGGGCGa -3'
miRNA:   3'- -GCAUGU---------------CGGA-UGUAg--UGGGguCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 61826 0.66 0.875627
Target:  5'- gCGgGCAcGCCU---UCGCCCCGGGGg- -3'
miRNA:   3'- -GCaUGU-CGGAuguAGUGGGGUCCCgc -5'
5117 3' -56.8 NC_001798.1 + 10480 0.66 0.875627
Target:  5'- uGUACAGaCCgcUGUCcguCUCCAGGGCc -3'
miRNA:   3'- gCAUGUC-GGauGUAGu--GGGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 53517 0.66 0.874909
Target:  5'- --aGCGGCCUggACAUCcccgacgACCCgGcGGGCGa -3'
miRNA:   3'- gcaUGUCGGA--UGUAG-------UGGGgU-CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 48359 0.66 0.868355
Target:  5'- --cGCGGCCgccCGgggcCGCCCCgcGGGGCGu -3'
miRNA:   3'- gcaUGUCGGau-GUa---GUGGGG--UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 20111 0.66 0.868355
Target:  5'- cCGUugGucucgagauuGCCaACAUCACaCUCGGGGCc -3'
miRNA:   3'- -GCAugU----------CGGaUGUAGUG-GGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 73080 0.66 0.868355
Target:  5'- -cUACAGCCUGgG--GCCCCuGGGUc -3'
miRNA:   3'- gcAUGUCGGAUgUagUGGGGuCCCGc -5'
5117 3' -56.8 NC_001798.1 + 150307 0.66 0.86389
Target:  5'- uGUGCuugggugucggucugAGCCUGgGUCAUgcgcgaCCGGGGCGc -3'
miRNA:   3'- gCAUG---------------UCGGAUgUAGUGg-----GGUCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.