Results 1 - 20 of 79 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 77686 | 0.66 | 0.896136 |
Target: 5'- --gGCGGCCcag--CGCgCCCGGGGCa -3' miRNA: 3'- gcaUGUCGGauguaGUG-GGGUCCCGc -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 5015 | 0.66 | 0.896136 |
Target: 5'- cCGcUGCuccGCCgACAUCGCCuccgaCCGGGGUGu -3' miRNA: 3'- -GC-AUGu--CGGaUGUAGUGG-----GGUCCCGC- -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 18083 | 0.66 | 0.896136 |
Target: 5'- gGUA-GGCC-ACGUCA-UCCGGGGCGu -3' miRNA: 3'- gCAUgUCGGaUGUAGUgGGGUCCCGC- -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 44803 | 0.66 | 0.895484 |
Target: 5'- uCGUgaucGCAGUCUuccgucccCAUCGCCCCugcgaacccggagGGGGUGg -3' miRNA: 3'- -GCA----UGUCGGAu-------GUAGUGGGG-------------UCCCGC- -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 65640 | 0.66 | 0.889521 |
Target: 5'- --cACGGCCcgaACGUCGCUgugCCAGGGUu -3' miRNA: 3'- gcaUGUCGGa--UGUAGUGG---GGUCCCGc -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 135345 | 0.66 | 0.889521 |
Target: 5'- gCGUGCGacGCCUGCcccgCGCUCCGGcagcugcucGGCGg -3' miRNA: 3'- -GCAUGU--CGGAUGua--GUGGGGUC---------CCGC- -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 85001 | 0.66 | 0.888847 |
Target: 5'- gCGUGCgccccgcucgaccGGCCauggcgACGUcCGCCCCGGGGg- -3' miRNA: 3'- -GCAUG-------------UCGGa-----UGUA-GUGGGGUCCCgc -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 93483 | 0.66 | 0.882684 |
Target: 5'- aCGUGguGCCcgggUACGaggggCGCCCCAcGGCGc -3' miRNA: 3'- -GCAUguCGG----AUGUa----GUGGGGUcCCGC- -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 93268 | 0.66 | 0.882684 |
Target: 5'- --cGCGGCCcGCGccggCGCCgUCGGGGCGu -3' miRNA: 3'- gcaUGUCGGaUGUa---GUGG-GGUCCCGC- -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 105384 | 0.66 | 0.882684 |
Target: 5'- --gGCGGCCUggagggcgGCGUU-CUCCAGGGCc -3' miRNA: 3'- gcaUGUCGGA--------UGUAGuGGGGUCCCGc -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 10568 | 0.66 | 0.882684 |
Target: 5'- -aUACAGUCccuCGUCGCCCgCGGGGa- -3' miRNA: 3'- gcAUGUCGGau-GUAGUGGG-GUCCCgc -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 29990 | 0.66 | 0.881988 |
Target: 5'- cCGUG-GGCCgUGCGcCGCCCCccgacccucugggGGGGCGa -3' miRNA: 3'- -GCAUgUCGG-AUGUaGUGGGG-------------UCCCGC- -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 121530 | 0.66 | 0.878475 |
Target: 5'- cCGUACAcggucgcggcgcugcGCCUgGCGUgggGCCCguGGGCGa -3' miRNA: 3'- -GCAUGU---------------CGGA-UGUAg--UGGGguCCCGC- -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 61826 | 0.66 | 0.875627 |
Target: 5'- gCGgGCAcGCCU---UCGCCCCGGGGg- -3' miRNA: 3'- -GCaUGU-CGGAuguAGUGGGGUCCCgc -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 10480 | 0.66 | 0.875627 |
Target: 5'- uGUACAGaCCgcUGUCcguCUCCAGGGCc -3' miRNA: 3'- gCAUGUC-GGauGUAGu--GGGGUCCCGc -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 53517 | 0.66 | 0.874909 |
Target: 5'- --aGCGGCCUggACAUCcccgacgACCCgGcGGGCGa -3' miRNA: 3'- gcaUGUCGGA--UGUAG-------UGGGgU-CCCGC- -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 48359 | 0.66 | 0.868355 |
Target: 5'- --cGCGGCCgccCGgggcCGCCCCgcGGGGCGu -3' miRNA: 3'- gcaUGUCGGau-GUa---GUGGGG--UCCCGC- -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 20111 | 0.66 | 0.868355 |
Target: 5'- cCGUugGucucgagauuGCCaACAUCACaCUCGGGGCc -3' miRNA: 3'- -GCAugU----------CGGaUGUAGUG-GGGUCCCGc -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 73080 | 0.66 | 0.868355 |
Target: 5'- -cUACAGCCUGgG--GCCCCuGGGUc -3' miRNA: 3'- gcAUGUCGGAUgUagUGGGGuCCCGc -5' |
|||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 150307 | 0.66 | 0.86389 |
Target: 5'- uGUGCuugggugucggucugAGCCUGgGUCAUgcgcgaCCGGGGCGc -3' miRNA: 3'- gCAUG---------------UCGGAUgUAGUGg-----GGUCCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home