miRNA display CGI


Results 1 - 20 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5119 5' -61.9 NC_001798.1 + 138345 0.66 0.705998
Target:  5'- cGAGGCgGCCGagcCGGCCuucGUCUcgucauccucccccaGCGCCUu -3'
miRNA:   3'- aCUCUGgUGGC---GCCGG---CAGG---------------UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 125552 0.66 0.702181
Target:  5'- -cAGGcCCGCCGaCGcCuCGUCgACGCCCa -3'
miRNA:   3'- acUCU-GGUGGC-GCcG-GCAGgUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 76703 0.66 0.702181
Target:  5'- gGAGGCgCGCuCcCGGCuucgggagcgCGcCCACGCCCu -3'
miRNA:   3'- aCUCUG-GUG-GcGCCG----------GCaGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 76874 0.66 0.702181
Target:  5'- cUGGcGACC-CUGCgGGCC-UCCcUGCCCg -3'
miRNA:   3'- -ACU-CUGGuGGCG-CCGGcAGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 100857 0.66 0.702181
Target:  5'- gUGGGGCUGCUGguccUGGCCGgCCugGUCg -3'
miRNA:   3'- -ACUCUGGUGGC----GCCGGCaGGugCGGg -5'
5119 5' -61.9 NC_001798.1 + 135053 0.66 0.702181
Target:  5'- gGAGGCgGCC--GGCCGccUCC-UGCCCg -3'
miRNA:   3'- aCUCUGgUGGcgCCGGC--AGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 140551 0.66 0.702181
Target:  5'- gGAGGUCAgCGCguacauGGCCaagcUCCACGCCUa -3'
miRNA:   3'- aCUCUGGUgGCG------CCGGc---AGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 197 0.66 0.702181
Target:  5'- cGGGcGCCcCCgcGCGGCUuuuuucCCGCGCCCg -3'
miRNA:   3'- aCUC-UGGuGG--CGCCGGca----GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 3273 0.66 0.702181
Target:  5'- cGGGcACCGCgCGCucgucGGCCGgCgACGCCg -3'
miRNA:   3'- aCUC-UGGUG-GCG-----CCGGCaGgUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 21076 0.66 0.702181
Target:  5'- cGGGGCC-CCGUccccccGGcCCGUCCcccCGUCCc -3'
miRNA:   3'- aCUCUGGuGGCG------CC-GGCAGGu--GCGGG- -5'
5119 5' -61.9 NC_001798.1 + 59867 0.66 0.702181
Target:  5'- gGAGuCCugGCUGUGGUCGggCCG-GCCCg -3'
miRNA:   3'- aCUCuGG--UGGCGCCGGCa-GGUgCGGG- -5'
5119 5' -61.9 NC_001798.1 + 106745 0.66 0.702181
Target:  5'- gGGGGCCuccggagcCCGCGGggauCCGgagcugcCCACGCUCu -3'
miRNA:   3'- aCUCUGGu-------GGCGCC----GGCa------GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 154535 0.66 0.702181
Target:  5'- cGGGcGCCcCCgcGCGGCUuuuuucCCGCGCCCg -3'
miRNA:   3'- aCUC-UGGuGG--CGCCGGca----GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 3375 0.66 0.702181
Target:  5'- cGucGCCGCCGUcGUCGggggUUCGCGCCCc -3'
miRNA:   3'- aCucUGGUGGCGcCGGC----AGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 69226 0.66 0.702181
Target:  5'- -aGGAgCGCCcCGGCCGgcUCCGCGUUUg -3'
miRNA:   3'- acUCUgGUGGcGCCGGC--AGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 72720 0.66 0.702181
Target:  5'- --uGGCCAUCGUgucgGGCa-UCCACGCCa -3'
miRNA:   3'- acuCUGGUGGCG----CCGgcAGGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 122384 0.66 0.702181
Target:  5'- --cGcCCcCCGCGGCUGUCCuccgagcuggccACgGCCCu -3'
miRNA:   3'- acuCuGGuGGCGCCGGCAGG------------UG-CGGG- -5'
5119 5' -61.9 NC_001798.1 + 58919 0.66 0.701226
Target:  5'- cGAGGCUccacaggGCCaCGGCCGcUCCccCGCCg -3'
miRNA:   3'- aCUCUGG-------UGGcGCCGGC-AGGu-GCGGg -5'
5119 5' -61.9 NC_001798.1 + 15108 0.66 0.699313
Target:  5'- cGAGGCCGguggcgcugUCGuCGuccucgggggguucGCCGUCCccgGCGCCCu -3'
miRNA:   3'- aCUCUGGU---------GGC-GC--------------CGGCAGG---UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 135545 0.66 0.69644
Target:  5'- cGAGGCguCCGUGcgcGCCGUaCUuucggccaacggcauACGCCCg -3'
miRNA:   3'- aCUCUGguGGCGC---CGGCA-GG---------------UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.