Results 1 - 20 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5120 | 3' | -58.3 | NC_001798.1 | + | 73303 | 0.66 | 0.837835 |
Target: 5'- aCGAcaccCGGCccacaggaCACGCAG--GCCCGCGCg -3' miRNA: 3'- -GCU----GCCGa-------GUGCGUCguUGGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 83031 | 0.66 | 0.837835 |
Target: 5'- gGGCGcuGUUUcaGCGCAGCAACgCCGUGCUg -3' miRNA: 3'- gCUGC--CGAG--UGCGUCGUUG-GGUGCGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 25088 | 0.66 | 0.837835 |
Target: 5'- gGGCGccGC-CGgGCGGCGcCCCGCGCc -3' miRNA: 3'- gCUGC--CGaGUgCGUCGUuGGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 42764 | 0.66 | 0.837835 |
Target: 5'- gGGCGGCgCGCGgGGCcGACagGCGCUu -3' miRNA: 3'- gCUGCCGaGUGCgUCG-UUGggUGCGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 49683 | 0.66 | 0.837835 |
Target: 5'- uCGACGGcCUC-UGCuGCGACCUggagagcugGCGCc -3' miRNA: 3'- -GCUGCC-GAGuGCGuCGUUGGG---------UGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 4484 | 0.66 | 0.837835 |
Target: 5'- --cCGGUcCGCGgaccCAGCGGCCCGCGUc -3' miRNA: 3'- gcuGCCGaGUGC----GUCGUUGGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 25889 | 0.66 | 0.837835 |
Target: 5'- cCGACGGgcccgugguCUCGCgGCAGCAcGCCUAC-CUg -3' miRNA: 3'- -GCUGCC---------GAGUG-CGUCGU-UGGGUGcGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 93438 | 0.66 | 0.837835 |
Target: 5'- --cCGGCacgCACGUGGCGgccaACCCGCaGCUg -3' miRNA: 3'- gcuGCCGa--GUGCGUCGU----UGGGUG-CGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 112626 | 0.66 | 0.837835 |
Target: 5'- aCGACGGCuuccgUCACGCA-CGGCCgGC-CUu -3' miRNA: 3'- -GCUGCCG-----AGUGCGUcGUUGGgUGcGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 88081 | 0.66 | 0.837026 |
Target: 5'- gCGGCGGCgucuagcUCGCggaggGCGGCcAgCCGCGCg -3' miRNA: 3'- -GCUGCCG-------AGUG-----CGUCGuUgGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 28604 | 0.66 | 0.835402 |
Target: 5'- aGACGGC-CGCGC-GCcuGGCCCgacggggguccuggGCGCg -3' miRNA: 3'- gCUGCCGaGUGCGuCG--UUGGG--------------UGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 28792 | 0.66 | 0.835402 |
Target: 5'- gCGGCGGCggCGCGCGgguccuccgccgccGCGgGCCCGgGCc -3' miRNA: 3'- -GCUGCCGa-GUGCGU--------------CGU-UGGGUgCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 109619 | 0.66 | 0.835402 |
Target: 5'- uCGGCGGC-CGCGC-GCuaaccGCCCcgaugguccgccgaGCGCUg -3' miRNA: 3'- -GCUGCCGaGUGCGuCGu----UGGG--------------UGCGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 118069 | 0.66 | 0.835402 |
Target: 5'- gCGACcccgcccuGCU-ACGCAGCGcccgcgauggggagGCCCACGCg -3' miRNA: 3'- -GCUGc-------CGAgUGCGUCGU--------------UGGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 11861 | 0.66 | 0.829661 |
Target: 5'- cCGGCuGGCguucgUCGCGCuGcCGACCCauACGCg -3' miRNA: 3'- -GCUG-CCG-----AGUGCGuC-GUUGGG--UGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 114528 | 0.66 | 0.829661 |
Target: 5'- uCGcCaGCUgCGCGCcauccAGCAGCUCGCGCg -3' miRNA: 3'- -GCuGcCGA-GUGCG-----UCGUUGGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 56680 | 0.66 | 0.829661 |
Target: 5'- uGAUGGUUgGcCGCGGCAGCaCCgAUGCc -3' miRNA: 3'- gCUGCCGAgU-GCGUCGUUG-GG-UGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 40991 | 0.66 | 0.829661 |
Target: 5'- cCGAgGGC-CACgaagcggaGCAGCAGCUCGCaGCc -3' miRNA: 3'- -GCUgCCGaGUG--------CGUCGUUGGGUG-CGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 33900 | 0.66 | 0.829661 |
Target: 5'- aCGACGcGuUUUGCGgGGCAugcaagucgacACCCGCGCg -3' miRNA: 3'- -GCUGC-C-GAGUGCgUCGU-----------UGGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 12035 | 0.66 | 0.829661 |
Target: 5'- gGGCGGCgggggCAUGCGGuCAGugugaCCACGUg -3' miRNA: 3'- gCUGCCGa----GUGCGUC-GUUg----GGUGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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