miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 112626 0.66 0.837835
Target:  5'- aCGACGGCuuccgUCACGCA-CGGCCgGC-CUu -3'
miRNA:   3'- -GCUGCCG-----AGUGCGUcGUUGGgUGcGA- -5'
5120 3' -58.3 NC_001798.1 + 93438 0.66 0.837835
Target:  5'- --cCGGCacgCACGUGGCGgccaACCCGCaGCUg -3'
miRNA:   3'- gcuGCCGa--GUGCGUCGU----UGGGUG-CGA- -5'
5120 3' -58.3 NC_001798.1 + 25889 0.66 0.837835
Target:  5'- cCGACGGgcccgugguCUCGCgGCAGCAcGCCUAC-CUg -3'
miRNA:   3'- -GCUGCC---------GAGUG-CGUCGU-UGGGUGcGA- -5'
5120 3' -58.3 NC_001798.1 + 4484 0.66 0.837835
Target:  5'- --cCGGUcCGCGgaccCAGCGGCCCGCGUc -3'
miRNA:   3'- gcuGCCGaGUGC----GUCGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 49683 0.66 0.837835
Target:  5'- uCGACGGcCUC-UGCuGCGACCUggagagcugGCGCc -3'
miRNA:   3'- -GCUGCC-GAGuGCGuCGUUGGG---------UGCGa -5'
5120 3' -58.3 NC_001798.1 + 42764 0.66 0.837835
Target:  5'- gGGCGGCgCGCGgGGCcGACagGCGCUu -3'
miRNA:   3'- gCUGCCGaGUGCgUCG-UUGggUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 25088 0.66 0.837835
Target:  5'- gGGCGccGC-CGgGCGGCGcCCCGCGCc -3'
miRNA:   3'- gCUGC--CGaGUgCGUCGUuGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 83031 0.66 0.837835
Target:  5'- gGGCGcuGUUUcaGCGCAGCAACgCCGUGCUg -3'
miRNA:   3'- gCUGC--CGAG--UGCGUCGUUG-GGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 73303 0.66 0.837835
Target:  5'- aCGAcaccCGGCccacaggaCACGCAG--GCCCGCGCg -3'
miRNA:   3'- -GCU----GCCGa-------GUGCGUCguUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 88081 0.66 0.837026
Target:  5'- gCGGCGGCgucuagcUCGCggaggGCGGCcAgCCGCGCg -3'
miRNA:   3'- -GCUGCCG-------AGUG-----CGUCGuUgGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 118069 0.66 0.835402
Target:  5'- gCGACcccgcccuGCU-ACGCAGCGcccgcgauggggagGCCCACGCg -3'
miRNA:   3'- -GCUGc-------CGAgUGCGUCGU--------------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 28604 0.66 0.835402
Target:  5'- aGACGGC-CGCGC-GCcuGGCCCgacggggguccuggGCGCg -3'
miRNA:   3'- gCUGCCGaGUGCGuCG--UUGGG--------------UGCGa -5'
5120 3' -58.3 NC_001798.1 + 28792 0.66 0.835402
Target:  5'- gCGGCGGCggCGCGCGgguccuccgccgccGCGgGCCCGgGCc -3'
miRNA:   3'- -GCUGCCGa-GUGCGU--------------CGU-UGGGUgCGa -5'
5120 3' -58.3 NC_001798.1 + 109619 0.66 0.835402
Target:  5'- uCGGCGGC-CGCGC-GCuaaccGCCCcgaugguccgccgaGCGCUg -3'
miRNA:   3'- -GCUGCCGaGUGCGuCGu----UGGG--------------UGCGA- -5'
5120 3' -58.3 NC_001798.1 + 11861 0.66 0.829661
Target:  5'- cCGGCuGGCguucgUCGCGCuGcCGACCCauACGCg -3'
miRNA:   3'- -GCUG-CCG-----AGUGCGuC-GUUGGG--UGCGa -5'
5120 3' -58.3 NC_001798.1 + 114528 0.66 0.829661
Target:  5'- uCGcCaGCUgCGCGCcauccAGCAGCUCGCGCg -3'
miRNA:   3'- -GCuGcCGA-GUGCG-----UCGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 56680 0.66 0.829661
Target:  5'- uGAUGGUUgGcCGCGGCAGCaCCgAUGCc -3'
miRNA:   3'- gCUGCCGAgU-GCGUCGUUG-GG-UGCGa -5'
5120 3' -58.3 NC_001798.1 + 40991 0.66 0.829661
Target:  5'- cCGAgGGC-CACgaagcggaGCAGCAGCUCGCaGCc -3'
miRNA:   3'- -GCUgCCGaGUG--------CGUCGUUGGGUG-CGa -5'
5120 3' -58.3 NC_001798.1 + 33900 0.66 0.829661
Target:  5'- aCGACGcGuUUUGCGgGGCAugcaagucgacACCCGCGCg -3'
miRNA:   3'- -GCUGC-C-GAGUGCgUCGU-----------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 12035 0.66 0.829661
Target:  5'- gGGCGGCgggggCAUGCGGuCAGugugaCCACGUg -3'
miRNA:   3'- gCUGCCGa----GUGCGUC-GUUg----GGUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.