Results 1 - 20 of 213 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5123 | 3' | -64.9 | NC_001798.1 | + | 11041 | 0.65 | 0.555632 |
Target: 5'- cCCCCCGGGCcCcGCccauccauuaccCGCCUCCCa -3' miRNA: 3'- cGGGGGUCCGcGaCGca----------GCGGAGGGg -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 140412 | 0.66 | 0.549998 |
Target: 5'- aCCUCaugaAGGUGCUGgaGUacgGCCUUCCCa -3' miRNA: 3'- cGGGGg---UCCGCGACg-CAg--CGGAGGGG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 3052 | 0.66 | 0.549998 |
Target: 5'- gGCCgCCAGGuCGC--CGUCGaagcCCUCCgCCa -3' miRNA: 3'- -CGGgGGUCC-GCGacGCAGC----GGAGG-GG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 51434 | 0.66 | 0.549998 |
Target: 5'- gGCCCCgGGGCGCg-----GCCUUCCg -3' miRNA: 3'- -CGGGGgUCCGCGacgcagCGGAGGGg -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 78841 | 0.66 | 0.549998 |
Target: 5'- gGCCCCU-GGCGCgGCa-CGCCggCCgCCu -3' miRNA: 3'- -CGGGGGuCCGCGaCGcaGCGGa-GG-GG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 79913 | 0.66 | 0.549998 |
Target: 5'- aCCCUCAcGCGCgaguuuggGUGUCGCUgggCCCa -3' miRNA: 3'- cGGGGGUcCGCGa-------CGCAGCGGa--GGGg -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 110507 | 0.66 | 0.549998 |
Target: 5'- cGCCCCCGGGUuuCUG-GcCGCgUCCgCg -3' miRNA: 3'- -CGGGGGUCCGc-GACgCaGCGgAGGgG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 123934 | 0.66 | 0.549998 |
Target: 5'- uGCCCuggguCCGGGgGCcugGUGgCaCCUCCCCg -3' miRNA: 3'- -CGGG-----GGUCCgCGa--CGCaGcGGAGGGG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 4458 | 0.66 | 0.549998 |
Target: 5'- cGCCCCgCGGacCGCgGaCGUCGUCUCCgguCCg -3' miRNA: 3'- -CGGGG-GUCc-GCGaC-GCAGCGGAGG---GG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 64633 | 0.66 | 0.549998 |
Target: 5'- cGUgUUgGGGCGCaGCGucUCGCCgUCCCUg -3' miRNA: 3'- -CGgGGgUCCGCGaCGC--AGCGG-AGGGG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 86180 | 0.66 | 0.549998 |
Target: 5'- gGCCCC---GCGUuuUGCGcaguUCGCCgagCCCCa -3' miRNA: 3'- -CGGGGgucCGCG--ACGC----AGCGGa--GGGG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 34993 | 0.66 | 0.549061 |
Target: 5'- gGCCCCUccggccgGGGCGCaccucgGCG--GCCaagCCCCg -3' miRNA: 3'- -CGGGGG-------UCCGCGa-----CGCagCGGa--GGGG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 91633 | 0.66 | 0.54158 |
Target: 5'- gGCCgCCCGGGUgaGCgugacgucaaaggggGCGUgGCCgCCCUu -3' miRNA: 3'- -CGG-GGGUCCG--CGa--------------CGCAgCGGaGGGG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 2785 | 0.66 | 0.540648 |
Target: 5'- aGCUCagCAGGCGCgggcuccGCGgcagCGCCgggcccagggCCCCg -3' miRNA: 3'- -CGGGg-GUCCGCGa------CGCa---GCGGa---------GGGG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 55162 | 0.66 | 0.540648 |
Target: 5'- cGCCCCCGGaccaacGCGCUggccaacgacgGCccgacgaacGUCGCCgCCCUc -3' miRNA: 3'- -CGGGGGUC------CGCGA-----------CG---------CAGCGGaGGGG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 134371 | 0.66 | 0.540648 |
Target: 5'- gGCCCgCCGGcCGCUccucGCGcCGCC-CUCCu -3' miRNA: 3'- -CGGG-GGUCcGCGA----CGCaGCGGaGGGG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 91108 | 0.66 | 0.539716 |
Target: 5'- -aCCCCGGuGCGCUGC-UCcgcggggGCgUCCUCg -3' miRNA: 3'- cgGGGGUC-CGCGACGcAG-------CGgAGGGG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 48986 | 0.66 | 0.537853 |
Target: 5'- cCCCCCAGGCcaGCcggGgGUCccaagaacaccccaGCCgCCCCu -3' miRNA: 3'- cGGGGGUCCG--CGa--CgCAG--------------CGGaGGGG- -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 97425 | 0.66 | 0.535063 |
Target: 5'- aGCCCCgAgcagugcgacgaggaGGCGCUGCGcCGCgUgCUg -3' miRNA: 3'- -CGGGGgU---------------CCGCGACGCaGCGgAgGGg -5' |
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5123 | 3' | -64.9 | NC_001798.1 | + | 129660 | 0.66 | 0.531351 |
Target: 5'- uGCCCCCcgacGUGC-GCGUggucacccgggCGCCggggCCCCa -3' miRNA: 3'- -CGGGGGuc--CGCGaCGCA-----------GCGGa---GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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