miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5125 3' -53 NC_001798.1 + 104526 0.66 0.977899
Target:  5'- cGGCGCGguugACgUCGuc--GCGguGGGCCACg -3'
miRNA:   3'- -UCGUGCa---UG-AGCuuuaUGC--CCCGGUG- -5'
5125 3' -53 NC_001798.1 + 55797 0.66 0.977899
Target:  5'- uGCuCGUGCUCGAcgGGggUGGGGucCCACg -3'
miRNA:   3'- uCGuGCAUGAGCU--UUauGCCCC--GGUG- -5'
5125 3' -53 NC_001798.1 + 52531 0.66 0.977899
Target:  5'- cGCGcCGUGCUgGcg--ACGGGGCuCAUc -3'
miRNA:   3'- uCGU-GCAUGAgCuuuaUGCCCCG-GUG- -5'
5125 3' -53 NC_001798.1 + 95366 0.66 0.977899
Target:  5'- gGGCAUcauugCGGAggGCGGGGCgGCg -3'
miRNA:   3'- -UCGUGcaugaGCUUuaUGCCCCGgUG- -5'
5125 3' -53 NC_001798.1 + 104661 0.66 0.977899
Target:  5'- gGGCccCGUGCUCGua--GCGGccgccGGCCGCc -3'
miRNA:   3'- -UCGu-GCAUGAGCuuuaUGCC-----CCGGUG- -5'
5125 3' -53 NC_001798.1 + 50640 0.66 0.977899
Target:  5'- -uCGCGUcacagaacgGCUCGugGUGCuGGGGuCCGCg -3'
miRNA:   3'- ucGUGCA---------UGAGCuuUAUG-CCCC-GGUG- -5'
5125 3' -53 NC_001798.1 + 65748 0.66 0.977899
Target:  5'- cGGCAUGaUGCUgGcgGUGcCGGGGCUg- -3'
miRNA:   3'- -UCGUGC-AUGAgCuuUAU-GCCCCGGug -5'
5125 3' -53 NC_001798.1 + 84737 0.66 0.975406
Target:  5'- --uGCGUAUgUGggGcgGCGGGGCCGu -3'
miRNA:   3'- ucgUGCAUGaGCuuUa-UGCCCCGGUg -5'
5125 3' -53 NC_001798.1 + 153072 0.66 0.975406
Target:  5'- uGGgGCGgGCg-GAGcgGCGGGGCgGCg -3'
miRNA:   3'- -UCgUGCaUGagCUUuaUGCCCCGgUG- -5'
5125 3' -53 NC_001798.1 + 5743 0.66 0.975406
Target:  5'- gGGCccGCGUcaucccgcGCUCcgccccAAAggggGCGGGGCCGCa -3'
miRNA:   3'- -UCG--UGCA--------UGAGc-----UUUa---UGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 6622 0.66 0.975406
Target:  5'- gGGgACGgGC-CGggGggACGGGGCCcCg -3'
miRNA:   3'- -UCgUGCaUGaGCuuUa-UGCCCCGGuG- -5'
5125 3' -53 NC_001798.1 + 16496 0.66 0.975406
Target:  5'- aGGCGCGggugaGC-CGGuAGUACGucacacGGGCCGCa -3'
miRNA:   3'- -UCGUGCa----UGaGCU-UUAUGC------CCCGGUG- -5'
5125 3' -53 NC_001798.1 + 77492 0.66 0.975406
Target:  5'- cGCGCGacgaccgcUGCUCGGGAaagccucGCGGGG-CACg -3'
miRNA:   3'- uCGUGC--------AUGAGCUUUa------UGCCCCgGUG- -5'
5125 3' -53 NC_001798.1 + 93825 0.66 0.975406
Target:  5'- cAGCGCGUACagcgacugCGAcGUGCuGGGGaaCUACg -3'
miRNA:   3'- -UCGUGCAUGa-------GCUuUAUG-CCCC--GGUG- -5'
5125 3' -53 NC_001798.1 + 23537 0.66 0.975406
Target:  5'- cGGCGCGgACgaCGAGGagGCGGGGgugcCCGCg -3'
miRNA:   3'- -UCGUGCaUGa-GCUUUa-UGCCCC----GGUG- -5'
5125 3' -53 NC_001798.1 + 46597 0.66 0.972713
Target:  5'- cGCGCGUcC-CGuu---CGGGGCUACg -3'
miRNA:   3'- uCGUGCAuGaGCuuuauGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 58198 0.66 0.972713
Target:  5'- cAGCaucGCGUAUaCGGcGAUGuCGGGGaCCACa -3'
miRNA:   3'- -UCG---UGCAUGaGCU-UUAU-GCCCC-GGUG- -5'
5125 3' -53 NC_001798.1 + 131042 0.66 0.972713
Target:  5'- cAGCGCGcGCUCGuAGcGCGaGGUCACc -3'
miRNA:   3'- -UCGUGCaUGAGCuUUaUGCcCCGGUG- -5'
5125 3' -53 NC_001798.1 + 135040 0.66 0.972713
Target:  5'- cGGC-CGUGgcCUCGGAG-GCGGccGGCCGCc -3'
miRNA:   3'- -UCGuGCAU--GAGCUUUaUGCC--CCGGUG- -5'
5125 3' -53 NC_001798.1 + 36608 0.66 0.972713
Target:  5'- cGCGCGgcgGC-CGG---GCGGGGgCGCg -3'
miRNA:   3'- uCGUGCa--UGaGCUuuaUGCCCCgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.