Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5125 | 3' | -53 | NC_001798.1 | + | 65748 | 0.66 | 0.977899 |
Target: 5'- cGGCAUGaUGCUgGcgGUGcCGGGGCUg- -3' miRNA: 3'- -UCGUGC-AUGAgCuuUAU-GCCCCGGug -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 50640 | 0.66 | 0.977899 |
Target: 5'- -uCGCGUcacagaacgGCUCGugGUGCuGGGGuCCGCg -3' miRNA: 3'- ucGUGCA---------UGAGCuuUAUG-CCCC-GGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 104661 | 0.66 | 0.977899 |
Target: 5'- gGGCccCGUGCUCGua--GCGGccgccGGCCGCc -3' miRNA: 3'- -UCGu-GCAUGAGCuuuaUGCC-----CCGGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 95366 | 0.66 | 0.977899 |
Target: 5'- gGGCAUcauugCGGAggGCGGGGCgGCg -3' miRNA: 3'- -UCGUGcaugaGCUUuaUGCCCCGgUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 52531 | 0.66 | 0.977899 |
Target: 5'- cGCGcCGUGCUgGcg--ACGGGGCuCAUc -3' miRNA: 3'- uCGU-GCAUGAgCuuuaUGCCCCG-GUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 55797 | 0.66 | 0.977899 |
Target: 5'- uGCuCGUGCUCGAcgGGggUGGGGucCCACg -3' miRNA: 3'- uCGuGCAUGAGCU--UUauGCCCC--GGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 104526 | 0.66 | 0.977899 |
Target: 5'- cGGCGCGguugACgUCGuc--GCGguGGGCCACg -3' miRNA: 3'- -UCGUGCa---UG-AGCuuuaUGC--CCCGGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 16496 | 0.66 | 0.975406 |
Target: 5'- aGGCGCGggugaGC-CGGuAGUACGucacacGGGCCGCa -3' miRNA: 3'- -UCGUGCa----UGaGCU-UUAUGC------CCCGGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 84737 | 0.66 | 0.975406 |
Target: 5'- --uGCGUAUgUGggGcgGCGGGGCCGu -3' miRNA: 3'- ucgUGCAUGaGCuuUa-UGCCCCGGUg -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 153072 | 0.66 | 0.975406 |
Target: 5'- uGGgGCGgGCg-GAGcgGCGGGGCgGCg -3' miRNA: 3'- -UCgUGCaUGagCUUuaUGCCCCGgUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 5743 | 0.66 | 0.975406 |
Target: 5'- gGGCccGCGUcaucccgcGCUCcgccccAAAggggGCGGGGCCGCa -3' miRNA: 3'- -UCG--UGCA--------UGAGc-----UUUa---UGCCCCGGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 6622 | 0.66 | 0.975406 |
Target: 5'- gGGgACGgGC-CGggGggACGGGGCCcCg -3' miRNA: 3'- -UCgUGCaUGaGCuuUa-UGCCCCGGuG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 77492 | 0.66 | 0.975406 |
Target: 5'- cGCGCGacgaccgcUGCUCGGGAaagccucGCGGGG-CACg -3' miRNA: 3'- uCGUGC--------AUGAGCUUUa------UGCCCCgGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 93825 | 0.66 | 0.975406 |
Target: 5'- cAGCGCGUACagcgacugCGAcGUGCuGGGGaaCUACg -3' miRNA: 3'- -UCGUGCAUGa-------GCUuUAUG-CCCC--GGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 23537 | 0.66 | 0.975406 |
Target: 5'- cGGCGCGgACgaCGAGGagGCGGGGgugcCCGCg -3' miRNA: 3'- -UCGUGCaUGa-GCUUUa-UGCCCC----GGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 150369 | 0.66 | 0.972713 |
Target: 5'- cGGCACGg---CGGGcgGCGcGGGCC-Cg -3' miRNA: 3'- -UCGUGCaugaGCUUuaUGC-CCCGGuG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 135040 | 0.66 | 0.972713 |
Target: 5'- cGGC-CGUGgcCUCGGAG-GCGGccGGCCGCc -3' miRNA: 3'- -UCGuGCAU--GAGCUUUaUGCC--CCGGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 131042 | 0.66 | 0.972713 |
Target: 5'- cAGCGCGcGCUCGuAGcGCGaGGUCACc -3' miRNA: 3'- -UCGUGCaUGAGCuUUaUGCcCCGGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 58198 | 0.66 | 0.972713 |
Target: 5'- cAGCaucGCGUAUaCGGcGAUGuCGGGGaCCACa -3' miRNA: 3'- -UCG---UGCAUGaGCU-UUAU-GCCCC-GGUG- -5' |
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5125 | 3' | -53 | NC_001798.1 | + | 46597 | 0.66 | 0.972713 |
Target: 5'- cGCGCGUcC-CGuu---CGGGGCUACg -3' miRNA: 3'- uCGUGCAuGaGCuuuauGCCCCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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