miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 97656 0.66 0.973383
Target:  5'- cGGGAgcgcCGGCGGCUGUAcgcGGACCGCc--- -3'
miRNA:   3'- -UCCU----GCUGCUGGCGU---UUUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 97212 0.66 0.973383
Target:  5'- cAGGA-GACcGCCGCGGuGGCCGUGGa- -3'
miRNA:   3'- -UCCUgCUGcUGGCGUU-UUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 59667 0.66 0.973383
Target:  5'- gGGGGCGAcuCGGCuCGCGuggGGGCgGCGGg- -3'
miRNA:   3'- -UCCUGCU--GCUG-GCGU---UUUGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 126123 0.66 0.973383
Target:  5'- gGGGACGGCGACCugGCGGA--CG-GAUGg -3'
miRNA:   3'- -UCCUGCUGCUGG--CGUUUugGCgCUAU- -5'
5126 3' -53.4 NC_001798.1 + 28600 0.66 0.973383
Target:  5'- uGGGA-GACGGCCGCGcgccuGGCC-CGAc- -3'
miRNA:   3'- -UCCUgCUGCUGGCGUu----UUGGcGCUau -5'
5126 3' -53.4 NC_001798.1 + 153356 0.66 0.973383
Target:  5'- cGGucCGAUGACCGCcucGGCCGCc--- -3'
miRNA:   3'- uCCu-GCUGCUGGCGuu-UUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 83854 0.66 0.973109
Target:  5'- cGGGCGGCGcuggcggGCC-CGAGGCgGCGAc- -3'
miRNA:   3'- uCCUGCUGC-------UGGcGUUUUGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 104659 0.66 0.972833
Target:  5'- cAGGGCcccgugcucguaGCGGCCGCcGGccGCCGCGAa- -3'
miRNA:   3'- -UCCUGc-----------UGCUGGCGuUU--UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 142481 0.66 0.970551
Target:  5'- cGGGACGGCccccgaGGCggCGCGGGGgUGCGAUAa -3'
miRNA:   3'- -UCCUGCUG------CUG--GCGUUUUgGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 53439 0.66 0.970551
Target:  5'- gAGGugGagcugucggGCGGCCaGCuGAGCCGCGc-- -3'
miRNA:   3'- -UCCugC---------UGCUGG-CGuUUUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 154409 0.66 0.96751
Target:  5'- cGGGCGGCGGCgGCGggcGGGCgGCa--- -3'
miRNA:   3'- uCCUGCUGCUGgCGU---UUUGgCGcuau -5'
5126 3' -53.4 NC_001798.1 + 24903 0.66 0.96751
Target:  5'- uGGGccCGGCGcuGCCGCGGAGcCCGCGc-- -3'
miRNA:   3'- -UCCu-GCUGC--UGGCGUUUU-GGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 71 0.66 0.96751
Target:  5'- cGGGCGGCGGCgGCGggcGGGCgGCa--- -3'
miRNA:   3'- uCCUGCUGCUGgCGU---UUUGgCGcuau -5'
5126 3' -53.4 NC_001798.1 + 4850 0.66 0.96751
Target:  5'- cGGGGCGACGGuCCGgGuucgggguGGGCgGCGGUc -3'
miRNA:   3'- -UCCUGCUGCU-GGCgU--------UUUGgCGCUAu -5'
5126 3' -53.4 NC_001798.1 + 43446 0.66 0.96751
Target:  5'- uGGugGACGAgucugcgaccCCGCAGua-CGCGGg- -3'
miRNA:   3'- uCCugCUGCU----------GGCGUUuugGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 45351 0.66 0.96751
Target:  5'- gAGGACGugGCGAUCGCGGAGCgGg---- -3'
miRNA:   3'- -UCCUGC--UGCUGGCGUUUUGgCgcuau -5'
5126 3' -53.4 NC_001798.1 + 53524 0.66 0.96751
Target:  5'- uGGAcaucccCGACGACCcgGCGGgcGACUGCGAc- -3'
miRNA:   3'- uCCU------GCUGCUGG--CGUU--UUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 77487 0.66 0.96751
Target:  5'- cGGcccgcGCGACGACCGCugcucgggAAAGCCucGCGGg- -3'
miRNA:   3'- uCC-----UGCUGCUGGCG--------UUUUGG--CGCUau -5'
5126 3' -53.4 NC_001798.1 + 92100 0.66 0.96751
Target:  5'- gAGaGACGACGGCgGgCAGcAGCCGuCGAc- -3'
miRNA:   3'- -UC-CUGCUGCUGgC-GUU-UUGGC-GCUau -5'
5126 3' -53.4 NC_001798.1 + 68106 0.66 0.964252
Target:  5'- cGGACGcACGggGCCGCGcacggccaAGACgGCGAg- -3'
miRNA:   3'- uCCUGC-UGC--UGGCGU--------UUUGgCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.