Results 21 - 40 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 125365 | 0.73 | 0.335169 |
Target: 5'- cACG-CCCCCugAGuuGCGCCGGCACCa- -3' miRNA: 3'- -UGCuGGGGG--UUggUGCGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 83745 | 0.72 | 0.381711 |
Target: 5'- aGCGGCCCCCAgaaacaGCCcCGCCGccagcaacagaaGCGCCg- -3' miRNA: 3'- -UGCUGGGGGU------UGGuGCGGC------------UGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 100654 | 0.72 | 0.401497 |
Target: 5'- cACGACCUgcgcuuugCCGAcaucgacacggucauCCGCGCCGACGCCa- -3' miRNA: 3'- -UGCUGGG--------GGUU---------------GGUGCGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 24324 | 0.72 | 0.389876 |
Target: 5'- cGCGaACCCCCGACgacgGCGgCGACGCCa- -3' miRNA: 3'- -UGC-UGGGGGUUGg---UGCgGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 32636 | 0.72 | 0.381711 |
Target: 5'- -aGGcCCCCCGACUAC-CCGACGCCc- -3' miRNA: 3'- ugCU-GGGGGUUGGUGcGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 70928 | 0.72 | 0.421059 |
Target: 5'- gACGACCCCCGAUCGgggcgcggugguccCGCCGccGCugCUg -3' miRNA: 3'- -UGCUGGGGGUUGGU--------------GCGGC--UGugGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 114838 | 0.72 | 0.381711 |
Target: 5'- cCGugCCCCGccugACgCACGCCGACACg-- -3' miRNA: 3'- uGCugGGGGU----UG-GUGCGGCUGUGgaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 30440 | 0.72 | 0.423653 |
Target: 5'- cCGGCCCCCGGCCgaGCGCCagGGCAgCCc- -3' miRNA: 3'- uGCUGGGGGUUGG--UGCGG--CUGU-GGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 1167 | 0.71 | 0.459123 |
Target: 5'- gGCGGUCCCCAccaccuCCACGCCGcCGCCc- -3' miRNA: 3'- -UGCUGGGGGUu-----GGUGCGGCuGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 47908 | 0.71 | 0.450105 |
Target: 5'- -gGACCCCCAAaaugaCGCGCgGgGCGCCUa -3' miRNA: 3'- ugCUGGGGGUUg----GUGCGgC-UGUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 24863 | 0.71 | 0.47744 |
Target: 5'- gUGGCCgCCGugCGCGCCGugAgCCUg -3' miRNA: 3'- uGCUGGgGGUugGUGCGGCugU-GGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 121094 | 0.71 | 0.459123 |
Target: 5'- cACGcACCCCCcacCCACGCCccuuccGGCACCg- -3' miRNA: 3'- -UGC-UGGGGGuu-GGUGCGG------CUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 80502 | 0.71 | 0.47744 |
Target: 5'- uCGACgCCCu-CCugGCCGcACGCCUg -3' miRNA: 3'- uGCUGgGGGuuGGugCGGC-UGUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 82355 | 0.71 | 0.459123 |
Target: 5'- cGCGACCaaaCCcGCCGCGCgGACGCg-- -3' miRNA: 3'- -UGCUGGg--GGuUGGUGCGgCUGUGgaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 57238 | 0.7 | 0.515106 |
Target: 5'- uUGGCCCCCgGGCgGgGCCGACACgUUu -3' miRNA: 3'- uGCUGGGGG-UUGgUgCGGCUGUGgAA- -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 145983 | 0.7 | 0.505571 |
Target: 5'- cGCaGCCUCCGGCagCACGCCGACcACCg- -3' miRNA: 3'- -UGcUGGGGGUUG--GUGCGGCUG-UGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 147014 | 0.7 | 0.515106 |
Target: 5'- -gGACCCCCGGgCGgGCCGGgGCUUg -3' miRNA: 3'- ugCUGGGGGUUgGUgCGGCUgUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 87754 | 0.7 | 0.505571 |
Target: 5'- cGCGGCCCUgAGCCGCGCgGcCACg-- -3' miRNA: 3'- -UGCUGGGGgUUGGUGCGgCuGUGgaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 78271 | 0.7 | 0.496112 |
Target: 5'- gGCGugCCCCugGACCugGCgGcCGCCg- -3' miRNA: 3'- -UGCugGGGG--UUGGugCGgCuGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 6995 | 0.7 | 0.505571 |
Target: 5'- --uACCCCCAcccaACCagcGCGCCGGCGCUUa -3' miRNA: 3'- ugcUGGGGGU----UGG---UGCGGCUGUGGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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