Results 1 - 20 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 136839 | 1.05 | 0.002419 |
Target: 5'- cACGACCCCCAACCACGCCGACACCUUg -3' miRNA: 3'- -UGCUGGGGGUUGGUGCGGCUGUGGAA- -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 23296 | 0.88 | 0.039392 |
Target: 5'- cGCGACCCCCGgcGCCcCGCCGACACCa- -3' miRNA: 3'- -UGCUGGGGGU--UGGuGCGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 25173 | 0.79 | 0.149135 |
Target: 5'- cGCG-CCCCCcGCCcCGCCGACGCCg- -3' miRNA: 3'- -UGCuGGGGGuUGGuGCGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 147248 | 0.78 | 0.18652 |
Target: 5'- -gGGCCCCgGGCCGCGCCGGCGgCg- -3' miRNA: 3'- ugCUGGGGgUUGGUGCGGCUGUgGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 20494 | 0.76 | 0.249009 |
Target: 5'- cGCGAUCCCCGGaagaCugGCCGGgGCCUg -3' miRNA: 3'- -UGCUGGGGGUUg---GugCGGCUgUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 107223 | 0.76 | 0.226451 |
Target: 5'- --uGCCCCCGACCGCGCCcGGCACg-- -3' miRNA: 3'- ugcUGGGGGUUGGUGCGG-CUGUGgaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 30744 | 0.76 | 0.249009 |
Target: 5'- aACGACCCCCGGacCCGCGUgGAgGCCg- -3' miRNA: 3'- -UGCUGGGGGUU--GGUGCGgCUgUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 103578 | 0.75 | 0.26097 |
Target: 5'- gGCG-CCUCCAACCGCucgcgcauuuccGCCGACGCCa- -3' miRNA: 3'- -UGCuGGGGGUUGGUG------------CGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 25109 | 0.75 | 0.260361 |
Target: 5'- cGCGcCCCCCGaagaagaGCCGCGCgGACGCCc- -3' miRNA: 3'- -UGCuGGGGGU-------UGGUGCGgCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 93262 | 0.75 | 0.279781 |
Target: 5'- aACG-CCCgCGGcCCGCGCCGGCGCCg- -3' miRNA: 3'- -UGCuGGGgGUU-GGUGCGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 108281 | 0.75 | 0.286287 |
Target: 5'- aGCGACCCCCAGCgCggACGCUuGGCGCCc- -3' miRNA: 3'- -UGCUGGGGGUUG-G--UGCGG-CUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 78839 | 0.75 | 0.292912 |
Target: 5'- cCGGCCCCUGGCgcggCACGCCGGcCGCCUg -3' miRNA: 3'- uGCUGGGGGUUG----GUGCGGCU-GUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 24730 | 0.74 | 0.313501 |
Target: 5'- cGCGGCCgCCCcGCCgcACGCCGACGCg-- -3' miRNA: 3'- -UGCUGG-GGGuUGG--UGCGGCUGUGgaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 3148 | 0.74 | 0.306519 |
Target: 5'- cCGGCCgCCGccACCAcCGCCGGCGCCg- -3' miRNA: 3'- uGCUGGgGGU--UGGU-GCGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 103374 | 0.74 | 0.320604 |
Target: 5'- aACGGCCCCCGagggucguugACCACGgCGAgCACCc- -3' miRNA: 3'- -UGCUGGGGGU----------UGGUGCgGCU-GUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 66644 | 0.73 | 0.350211 |
Target: 5'- gGCGuCCCCCAgaaACCGCGCCacCGCCUc -3' miRNA: 3'- -UGCuGGGGGU---UGGUGCGGcuGUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 71805 | 0.73 | 0.34263 |
Target: 5'- cUGACCCCCAccaccccgGCCACGCCGcuguccGCGCUg- -3' miRNA: 3'- uGCUGGGGGU--------UGGUGCGGC------UGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 145534 | 0.73 | 0.373661 |
Target: 5'- cGCGcGCCCCCGcccgGCCgcccgcgucGCGCCGGCGCCc- -3' miRNA: 3'- -UGC-UGGGGGU----UGG---------UGCGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 130454 | 0.73 | 0.373661 |
Target: 5'- -gGGCCCCCGGCCACuGCUGcucCACCa- -3' miRNA: 3'- ugCUGGGGGUUGGUG-CGGCu--GUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 24986 | 0.73 | 0.335169 |
Target: 5'- uGCG-CCCCCug-CugGCCGACACCg- -3' miRNA: 3'- -UGCuGGGGGuugGugCGGCUGUGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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