Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5127 | 5' | -64.3 | NC_001798.1 | + | 108853 | 0.66 | 0.573221 |
Target: 5'- aCGAcGGGCG-GGC-UGGCgUUCGGGugcGACg -3' miRNA: 3'- -GCU-CCCGCaCCGcACCG-AGGCCC---CUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 95007 | 0.66 | 0.573221 |
Target: 5'- cCGcAGGGCGgcgcgGGCcUGGaggCCGGGGcccGCg -3' miRNA: 3'- -GC-UCCCGCa----CCGcACCga-GGCCCC---UG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 37209 | 0.66 | 0.573221 |
Target: 5'- aCGAcGGGCGcGGCGccggagcuuUGGC-CCaGGGGGg -3' miRNA: 3'- -GCU-CCCGCaCCGC---------ACCGaGG-CCCCUg -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 52340 | 0.66 | 0.573221 |
Target: 5'- cCGGGGuCGUGGCGgccgagcacgaGGCgCUGGGcGACa -3' miRNA: 3'- -GCUCCcGCACCGCa----------CCGaGGCCC-CUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 51693 | 0.66 | 0.573221 |
Target: 5'- aGcAGGGCGaGGCGcUGGCcugguacgUCaCGGGcGACg -3' miRNA: 3'- gC-UCCCGCaCCGC-ACCG--------AG-GCCC-CUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 34684 | 0.66 | 0.573221 |
Target: 5'- aGAGGGaaggGGCGcGGCgggaCGGGGGa -3' miRNA: 3'- gCUCCCgca-CCGCaCCGag--GCCCCUg -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 153522 | 0.66 | 0.573221 |
Target: 5'- aCGGGGGuCGgaggGGCGUcaggGGgUCgGaGGGGCg -3' miRNA: 3'- -GCUCCC-GCa---CCGCA----CCgAGgC-CCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 148277 | 0.66 | 0.570363 |
Target: 5'- -aGGGGCG-GGCGUGGCgggcaggugugcgggCGGGGu- -3' miRNA: 3'- gcUCCCGCaCCGCACCGag-------------GCCCCug -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 73517 | 0.66 | 0.563708 |
Target: 5'- gGGGGGgGUGGaaagGUGGCguagUGcGGGACg -3' miRNA: 3'- gCUCCCgCACCg---CACCGag--GC-CCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 43704 | 0.66 | 0.563708 |
Target: 5'- gGAGauGCGUGGCcaGGCgCgGGGGGCu -3' miRNA: 3'- gCUCc-CGCACCGcaCCGaGgCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 102973 | 0.66 | 0.563708 |
Target: 5'- aGAGcaGCGUGuGUGUGaGCgccuccacgCCGGGGGCc -3' miRNA: 3'- gCUCc-CGCAC-CGCAC-CGa--------GGCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 74528 | 0.66 | 0.560862 |
Target: 5'- gGGGGGCucggggcgcucuuuGUcGGUGUGGUcCCcaggGGGGACg -3' miRNA: 3'- gCUCCCG--------------CA-CCGCACCGaGG----CCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 4399 | 0.66 | 0.554237 |
Target: 5'- uGGuGGUGUcGGCGgGGCgCCGGGGGu -3' miRNA: 3'- gCUcCCGCA-CCGCaCCGaGGCCCCUg -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 146114 | 0.66 | 0.554237 |
Target: 5'- aGGGGGgGUGGUGgcGGCggCGGuGGAa -3' miRNA: 3'- gCUCCCgCACCGCa-CCGagGCC-CCUg -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 98566 | 0.66 | 0.553293 |
Target: 5'- uGGGGGCGcugguggccgcggUGGCGUcGGCggccCCGGcGGCc -3' miRNA: 3'- gCUCCCGC-------------ACCGCA-CCGa---GGCCcCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 112828 | 0.66 | 0.553293 |
Target: 5'- --uGGGCGUcagGGCGUGGgugugaaUUUCGGGGGu -3' miRNA: 3'- gcuCCCGCA---CCGCACC-------GAGGCCCCUg -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 70310 | 0.66 | 0.544814 |
Target: 5'- --cGGGCGcGGCGgucGGC-CCGGcGGAg -3' miRNA: 3'- gcuCCCGCaCCGCa--CCGaGGCC-CCUg -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 73202 | 0.66 | 0.541996 |
Target: 5'- cCGAcGGCGUguuucgcgccucGGCGUuucggccuuccgccGGC-CCGGGGGCc -3' miRNA: 3'- -GCUcCCGCA------------CCGCA--------------CCGaGGCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 101839 | 0.66 | 0.535443 |
Target: 5'- gCGGGGG-GaGGCGUGGgUCCcGGcGGCg -3' miRNA: 3'- -GCUCCCgCaCCGCACCgAGGcCC-CUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 28192 | 0.66 | 0.535443 |
Target: 5'- gCGAGGGCG-GGgGgaaGGCgCCGGaGGCc -3' miRNA: 3'- -GCUCCCGCaCCgCa--CCGaGGCCcCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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