miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 5' -64.3 NC_001798.1 + 153522 0.66 0.573221
Target:  5'- aCGGGGGuCGgaggGGCGUcaggGGgUCgGaGGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCA----CCgAGgC-CCCUG- -5'
5127 5' -64.3 NC_001798.1 + 108853 0.66 0.573221
Target:  5'- aCGAcGGGCG-GGC-UGGCgUUCGGGugcGACg -3'
miRNA:   3'- -GCU-CCCGCaCCGcACCG-AGGCCC---CUG- -5'
5127 5' -64.3 NC_001798.1 + 95007 0.66 0.573221
Target:  5'- cCGcAGGGCGgcgcgGGCcUGGaggCCGGGGcccGCg -3'
miRNA:   3'- -GC-UCCCGCa----CCGcACCga-GGCCCC---UG- -5'
5127 5' -64.3 NC_001798.1 + 37209 0.66 0.573221
Target:  5'- aCGAcGGGCGcGGCGccggagcuuUGGC-CCaGGGGGg -3'
miRNA:   3'- -GCU-CCCGCaCCGC---------ACCGaGG-CCCCUg -5'
5127 5' -64.3 NC_001798.1 + 52340 0.66 0.573221
Target:  5'- cCGGGGuCGUGGCGgccgagcacgaGGCgCUGGGcGACa -3'
miRNA:   3'- -GCUCCcGCACCGCa----------CCGaGGCCC-CUG- -5'
5127 5' -64.3 NC_001798.1 + 51693 0.66 0.573221
Target:  5'- aGcAGGGCGaGGCGcUGGCcugguacgUCaCGGGcGACg -3'
miRNA:   3'- gC-UCCCGCaCCGC-ACCG--------AG-GCCC-CUG- -5'
5127 5' -64.3 NC_001798.1 + 34684 0.66 0.573221
Target:  5'- aGAGGGaaggGGCGcGGCgggaCGGGGGa -3'
miRNA:   3'- gCUCCCgca-CCGCaCCGag--GCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 148277 0.66 0.570363
Target:  5'- -aGGGGCG-GGCGUGGCgggcaggugugcgggCGGGGu- -3'
miRNA:   3'- gcUCCCGCaCCGCACCGag-------------GCCCCug -5'
5127 5' -64.3 NC_001798.1 + 73517 0.66 0.563708
Target:  5'- gGGGGGgGUGGaaagGUGGCguagUGcGGGACg -3'
miRNA:   3'- gCUCCCgCACCg---CACCGag--GC-CCCUG- -5'
5127 5' -64.3 NC_001798.1 + 43704 0.66 0.563708
Target:  5'- gGAGauGCGUGGCcaGGCgCgGGGGGCu -3'
miRNA:   3'- gCUCc-CGCACCGcaCCGaGgCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 102973 0.66 0.563708
Target:  5'- aGAGcaGCGUGuGUGUGaGCgccuccacgCCGGGGGCc -3'
miRNA:   3'- gCUCc-CGCAC-CGCAC-CGa--------GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 74528 0.66 0.560862
Target:  5'- gGGGGGCucggggcgcucuuuGUcGGUGUGGUcCCcaggGGGGACg -3'
miRNA:   3'- gCUCCCG--------------CA-CCGCACCGaGG----CCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 4399 0.66 0.554237
Target:  5'- uGGuGGUGUcGGCGgGGCgCCGGGGGu -3'
miRNA:   3'- gCUcCCGCA-CCGCaCCGaGGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 146114 0.66 0.554237
Target:  5'- aGGGGGgGUGGUGgcGGCggCGGuGGAa -3'
miRNA:   3'- gCUCCCgCACCGCa-CCGagGCC-CCUg -5'
5127 5' -64.3 NC_001798.1 + 112828 0.66 0.553293
Target:  5'- --uGGGCGUcagGGCGUGGgugugaaUUUCGGGGGu -3'
miRNA:   3'- gcuCCCGCA---CCGCACC-------GAGGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 98566 0.66 0.553293
Target:  5'- uGGGGGCGcugguggccgcggUGGCGUcGGCggccCCGGcGGCc -3'
miRNA:   3'- gCUCCCGC-------------ACCGCA-CCGa---GGCCcCUG- -5'
5127 5' -64.3 NC_001798.1 + 70310 0.66 0.544814
Target:  5'- --cGGGCGcGGCGgucGGC-CCGGcGGAg -3'
miRNA:   3'- gcuCCCGCaCCGCa--CCGaGGCC-CCUg -5'
5127 5' -64.3 NC_001798.1 + 73202 0.66 0.541996
Target:  5'- cCGAcGGCGUguuucgcgccucGGCGUuucggccuuccgccGGC-CCGGGGGCc -3'
miRNA:   3'- -GCUcCCGCA------------CCGCA--------------CCGaGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 28192 0.66 0.535443
Target:  5'- gCGAGGGCG-GGgGgaaGGCgCCGGaGGCc -3'
miRNA:   3'- -GCUCCCGCaCCgCa--CCGaGGCCcCUG- -5'
5127 5' -64.3 NC_001798.1 + 27328 0.66 0.535443
Target:  5'- gGAGGGgGUGGCGgGGaaCCGugugcGGGCg -3'
miRNA:   3'- gCUCCCgCACCGCaCCgaGGCc----CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.