Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5128 | 5' | -57.2 | NC_001798.1 | + | 90698 | 0.67 | 0.824236 |
Target: 5'- gCCGCCGCCAggCgCUCGcAGAGAUcGCg -3' miRNA: 3'- gGGUGGUGGUa-GgGGGC-UCUCUAcUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 2163 | 0.67 | 0.824236 |
Target: 5'- aCCACgCGCaCGUCCUCCGGGucg-GGCa -3' miRNA: 3'- gGGUG-GUG-GUAGGGGGCUCucuaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 100952 | 0.67 | 0.82172 |
Target: 5'- gCUCACCACCAaggaacucaagacuUCcgaCCCCGGGGGcgugGGCg -3' miRNA: 3'- -GGGUGGUGGU--------------AG---GGGGCUCUCua--CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 21790 | 0.67 | 0.81579 |
Target: 5'- gCCCGCCccccguccggGCCcgCCucggggcggagCCCGcGGGAUGACg -3' miRNA: 3'- -GGGUGG----------UGGuaGG-----------GGGCuCUCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 43878 | 0.67 | 0.81579 |
Target: 5'- aCCCAgCgGCCGcggCCCCgCGGGAGuacUGGCu -3' miRNA: 3'- -GGGU-GgUGGUa--GGGG-GCUCUCu--ACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 7777 | 0.67 | 0.81579 |
Target: 5'- aCCCAcgacCCACCG-CCCCCGcuggcgggagccAGGGucgGACa -3' miRNA: 3'- -GGGU----GGUGGUaGGGGGC------------UCUCua-CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 91447 | 0.67 | 0.81579 |
Target: 5'- cCCCcCCACCcgCCCaCCcaacagcucgggGuGGGAUGGCg -3' miRNA: 3'- -GGGuGGUGGuaGGG-GG------------CuCUCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 150155 | 0.67 | 0.81579 |
Target: 5'- aCCCGC-GCC-UCUUCCGGGGGcgGGCc -3' miRNA: 3'- -GGGUGgUGGuAGGGGGCUCUCuaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 34134 | 0.68 | 0.807181 |
Target: 5'- aCCCG-CGCCugccCCCCCGGGAacGAcGACg -3' miRNA: 3'- -GGGUgGUGGua--GGGGGCUCU--CUaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 1 | 0.68 | 0.807181 |
Target: 5'- CCCGCCccGCCucuuuUCCCCCGGG-GAg--- -3' miRNA: 3'- GGGUGG--UGGu----AGGGGGCUCuCUacug -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 154338 | 0.68 | 0.79842 |
Target: 5'- uCCCGCCccGCCucuuuUCCCCCGGG-GAg--- -3' miRNA: 3'- -GGGUGG--UGGu----AGGGGGCUCuCUacug -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 85441 | 0.68 | 0.79842 |
Target: 5'- gCCUACCGCCucUCgCCCC-AGuGGGUGGCc -3' miRNA: 3'- -GGGUGGUGGu-AG-GGGGcUC-UCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 36003 | 0.68 | 0.793092 |
Target: 5'- uUCACCACCAcgCCCCCcaccGcgccuuggcuguuugGGGGGUGGCg -3' miRNA: 3'- gGGUGGUGGUa-GGGGG----C---------------UCUCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 135775 | 0.68 | 0.789513 |
Target: 5'- gCCgGCCGCCggCCCgCCG-GAGGaGGCc -3' miRNA: 3'- -GGgUGGUGGuaGGG-GGCuCUCUaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 320 | 0.68 | 0.789513 |
Target: 5'- aCCACCGCUcgCCCUCGcAGAccaGACa -3' miRNA: 3'- gGGUGGUGGuaGGGGGC-UCUcuaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 53335 | 0.68 | 0.789513 |
Target: 5'- aCCAUaaCACCGUCCCC-GAGAGccUGAUc -3' miRNA: 3'- gGGUG--GUGGUAGGGGgCUCUCu-ACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 145898 | 0.68 | 0.789513 |
Target: 5'- aCCGCCGCCGcgcCCCaCCGGcGGGAUcGCg -3' miRNA: 3'- gGGUGGUGGUa--GGG-GGCU-CUCUAcUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 382 | 0.68 | 0.784102 |
Target: 5'- cCCCGCCACCcccucccuccccuccAUCCCgCCGAGcucgcGGCa -3' miRNA: 3'- -GGGUGGUGG---------------UAGGG-GGCUCucua-CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 147470 | 0.68 | 0.780468 |
Target: 5'- gCCGCgugaGCCGUCCgCCGGGGGAcccaGGCu -3' miRNA: 3'- gGGUGg---UGGUAGGgGGCUCUCUa---CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 134919 | 0.68 | 0.780468 |
Target: 5'- gCCGCCGCCG-CCgCCGAGucggcgcGUGACc -3' miRNA: 3'- gGGUGGUGGUaGGgGGCUCuc-----UACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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