miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 134664 1.11 0.000665
Target:  5'- cCGCGGACACCCGCAGCGGGUCACGGCg -3'
miRNA:   3'- -GCGCCUGUGGGCGUCGCCCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 102764 0.82 0.074063
Target:  5'- gCGCGGgaACGCUCGCGGCGGGggaugugUCAUGGCa -3'
miRNA:   3'- -GCGCC--UGUGGGCGUCGCCC-------AGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 154129 0.81 0.084279
Target:  5'- gGCGGGgACCCcgGCGGCGGGaCAUGGCg -3'
miRNA:   3'- gCGCCUgUGGG--CGUCGCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 78530 0.81 0.084279
Target:  5'- gCGCGGAgGCcaCCG-AGCGGGUCAUGGCg -3'
miRNA:   3'- -GCGCCUgUG--GGCgUCGCCCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 27044 0.81 0.088641
Target:  5'- gGCGGcacgucucccGCGCCCGCGGgGGGUCugGGg -3'
miRNA:   3'- gCGCC----------UGUGGGCGUCgCCCAGugCCg -5'
5129 3' -62.1 NC_001798.1 + 36503 0.81 0.093218
Target:  5'- aCGCGGGCGgCCG-GGCGGGggcgCGCGGCg -3'
miRNA:   3'- -GCGCCUGUgGGCgUCGCCCa---GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 2997 0.8 0.098018
Target:  5'- cCGCGGGC-CCCGgGcGCGGGggCGCGGCg -3'
miRNA:   3'- -GCGCCUGuGGGCgU-CGCCCa-GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 97554 0.78 0.138697
Target:  5'- gCGgGGACGCCCGCgagcgaGGaCGGGgagCGCGGCc -3'
miRNA:   3'- -GCgCCUGUGGGCG------UC-GCCCa--GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 25874 0.78 0.138697
Target:  5'- cCGCGGACugGCCCGCcGaCGGGcccguggucUCGCGGCa -3'
miRNA:   3'- -GCGCCUG--UGGGCGuC-GCCC---------AGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 105195 0.78 0.138697
Target:  5'- gGCGGG-GCCCGCGGUGGGcgACGGCg -3'
miRNA:   3'- gCGCCUgUGGGCGUCGCCCagUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 69 0.78 0.145644
Target:  5'- gGCGGGCGgCgGCGGCGGGcggGCGGCa -3'
miRNA:   3'- gCGCCUGUgGgCGUCGCCCag-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 154407 0.78 0.145644
Target:  5'- gGCGGGCGgCgGCGGCGGGcggGCGGCa -3'
miRNA:   3'- gCGCCUGUgGgCGUCGCCCag-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 2252 0.77 0.160497
Target:  5'- gGCGGGCGCgCCGCcggggGGCGGG--GCGGCg -3'
miRNA:   3'- gCGCCUGUG-GGCG-----UCGCCCagUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 109108 0.77 0.160497
Target:  5'- gCGCuGGACGCCCucCGGCGGGUgGcCGGCu -3'
miRNA:   3'- -GCG-CCUGUGGGc-GUCGCCCAgU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 4183 0.77 0.160497
Target:  5'- gCGCcgaGGGuccCGCCCGCGGCGuGGUCuGCGGCg -3'
miRNA:   3'- -GCG---CCU---GUGGGCGUCGC-CCAG-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 134939 0.77 0.164419
Target:  5'- gGCGcGugACCUGguGCGGGgcgcCGCGGCc -3'
miRNA:   3'- gCGC-CugUGGGCguCGCCCa---GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 150845 0.77 0.164419
Target:  5'- aGgGGGCGCCgGU--CGGGUCGCGGCg -3'
miRNA:   3'- gCgCCUGUGGgCGucGCCCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 86110 0.77 0.176703
Target:  5'- cCGCGGACGCCCGCcGCGc--CGCGGUc -3'
miRNA:   3'- -GCGCCUGUGGGCGuCGCccaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 149984 0.76 0.180976
Target:  5'- gCGCGG-CGCCCGCGGacgcCGGGgcgaGCGGCc -3'
miRNA:   3'- -GCGCCuGUGGGCGUC----GCCCag--UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 52785 0.76 0.18534
Target:  5'- -cCGGGCGCCCGUgAGCGGG--ACGGCa -3'
miRNA:   3'- gcGCCUGUGGGCG-UCGCCCagUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.