miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 28610 0.66 0.699634
Target:  5'- cCGCGcGCcugGCCCGaCGG-GGGUcCugGGCg -3'
miRNA:   3'- -GCGCcUG---UGGGC-GUCgCCCA-GugCCG- -5'
5129 3' -62.1 NC_001798.1 + 93932 0.66 0.699634
Target:  5'- gCGCGGcCA-CCG-AGCGcGUCAUGGCc -3'
miRNA:   3'- -GCGCCuGUgGGCgUCGCcCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 86429 0.66 0.699634
Target:  5'- gGCGGACcccgaggcgcaGCCCGgGGaCGGGggC-CGGUu -3'
miRNA:   3'- gCGCCUG-----------UGGGCgUC-GCCCa-GuGCCG- -5'
5129 3' -62.1 NC_001798.1 + 77248 0.66 0.699634
Target:  5'- gGCGGACGCggUGuCGGCccuGGG-CGCGGCc -3'
miRNA:   3'- gCGCCUGUGg-GC-GUCG---CCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 1341 0.66 0.699634
Target:  5'- cCGCGG-C-CCgCGCAGCuccgccGGGccgccgcgCACGGCg -3'
miRNA:   3'- -GCGCCuGuGG-GCGUCG------CCCa-------GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 65134 0.66 0.699634
Target:  5'- aCGC--ACGCCUGCA-CGGcGUCGCGGa -3'
miRNA:   3'- -GCGccUGUGGGCGUcGCC-CAGUGCCg -5'
5129 3' -62.1 NC_001798.1 + 20564 0.66 0.699634
Target:  5'- uCGgGGAaaaccaCACCCGCAcGCcGGUCGgGGg -3'
miRNA:   3'- -GCgCCU------GUGGGCGU-CGcCCAGUgCCg -5'
5129 3' -62.1 NC_001798.1 + 15388 0.66 0.699634
Target:  5'- gGCGGagGCGCCCaccggacccgggGUuGCGGGUC-CGGg -3'
miRNA:   3'- gCGCC--UGUGGG------------CGuCGCCCAGuGCCg -5'
5129 3' -62.1 NC_001798.1 + 81122 0.66 0.699634
Target:  5'- aCGCGGAC-CCCuucuucGC-GCGGGcCAUccucgGGCg -3'
miRNA:   3'- -GCGCCUGuGGG------CGuCGCCCaGUG-----CCG- -5'
5129 3' -62.1 NC_001798.1 + 77686 0.66 0.69868
Target:  5'- gGCGGcccagcGCGCCCGgGGCagcagcgagcgcuGGGcCGcCGGCg -3'
miRNA:   3'- gCGCC------UGUGGGCgUCG-------------CCCaGU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 133295 0.66 0.690069
Target:  5'- cCGCGu--GCCUGCAGUGGGacUCgAUGGCc -3'
miRNA:   3'- -GCGCcugUGGGCGUCGCCC--AG-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 58987 0.66 0.690069
Target:  5'- gGcCGGGCGaaCGCGGgGGGggCGCGGa -3'
miRNA:   3'- gC-GCCUGUggGCGUCgCCCa-GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 137166 0.66 0.690069
Target:  5'- gCGCaGGACGCUgGUcGCGGuaaacCGCGGCu -3'
miRNA:   3'- -GCG-CCUGUGGgCGuCGCCca---GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 23509 0.66 0.690069
Target:  5'- cCGCaGAcCACgCCGCgGGCGGGaCccuCGGCg -3'
miRNA:   3'- -GCGcCU-GUG-GGCG-UCGCCCaGu--GCCG- -5'
5129 3' -62.1 NC_001798.1 + 34575 0.66 0.690069
Target:  5'- gGCGGACGgcUCaCGCGgcGCGGcGUCuCGGUg -3'
miRNA:   3'- gCGCCUGU--GG-GCGU--CGCC-CAGuGCCG- -5'
5129 3' -62.1 NC_001798.1 + 25130 0.66 0.687191
Target:  5'- gCGCGGACGCCCcccgccccGCGGCcgccccucccgcggGGGcCGCGc- -3'
miRNA:   3'- -GCGCCUGUGGG--------CGUCG--------------CCCaGUGCcg -5'
5129 3' -62.1 NC_001798.1 + 79282 0.66 0.684309
Target:  5'- cCGCGGACcuggcCCCGUGGgcgguggaggaguucCGGGgcgCGCGGg -3'
miRNA:   3'- -GCGCCUGu----GGGCGUC---------------GCCCa--GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 137446 0.66 0.680461
Target:  5'- cCGCGGggacGCGCUCGCccggaaaucGGCGGGggUugGGg -3'
miRNA:   3'- -GCGCC----UGUGGGCG---------UCGCCCa-GugCCg -5'
5129 3' -62.1 NC_001798.1 + 37188 0.66 0.680461
Target:  5'- nCGCGccaGGCGCCgCGCcgaacGaCGGG-CGCGGCg -3'
miRNA:   3'- -GCGC---CUGUGG-GCGu----C-GCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 88113 0.66 0.680461
Target:  5'- cCGCGcGACcgucuccucuACCUc--GCGGGUCugGGCc -3'
miRNA:   3'- -GCGC-CUG----------UGGGcguCGCCCAGugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.