miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 69 0.78 0.145644
Target:  5'- gGCGGGCGgCgGCGGCGGGcggGCGGCa -3'
miRNA:   3'- gCGCCUGUgGgCGUCGCCCag-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 150 0.68 0.577812
Target:  5'- cCGCGGGCGCCgccccuccccccgcgCGCcGCGGGgcugccuuccCGCGGg -3'
miRNA:   3'- -GCGCCUGUGG---------------GCGuCGCCCa---------GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 1199 0.67 0.622313
Target:  5'- cCGCGGcCAgcaccgucCCCGC-GCGGccCGCGGCc -3'
miRNA:   3'- -GCGCCuGU--------GGGCGuCGCCcaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 1341 0.66 0.699634
Target:  5'- cCGCGG-C-CCgCGCAGCuccgccGGGccgccgcgCACGGCg -3'
miRNA:   3'- -GCGCCuGuGG-GCGUCG------CCCa-------GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 1512 0.66 0.661144
Target:  5'- gGCGGcgGCCCGgccgucCAGCGccGGgagCACGGCg -3'
miRNA:   3'- gCGCCugUGGGC------GUCGC--CCa--GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 1815 0.75 0.239732
Target:  5'- cCGCGaGACcacggGCCCGuCGGCGGGccagucCGCGGCg -3'
miRNA:   3'- -GCGC-CUG-----UGGGC-GUCGCCCa-----GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 2084 0.71 0.394564
Target:  5'- gGCGGACcacuccgggggggGCCCGCccccGGCGcGGccCGCGGCc -3'
miRNA:   3'- gCGCCUG-------------UGGGCG----UCGC-CCa-GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 2220 0.69 0.471721
Target:  5'- aGCGGGCccgagGCgCGCAGCGGGcCgaaGGCn -3'
miRNA:   3'- gCGCCUG-----UGgGCGUCGCCCaGug-CCG- -5'
5129 3' -62.1 NC_001798.1 + 2252 0.77 0.160497
Target:  5'- gGCGGGCGCgCCGCcggggGGCGGG--GCGGCg -3'
miRNA:   3'- gCGCCUGUG-GGCG-----UCGCCCagUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 2449 0.74 0.274682
Target:  5'- gGCGGcgcCAgCCGCccuGCGGGUCGgGGCc -3'
miRNA:   3'- gCGCCu--GUgGGCGu--CGCCCAGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 2510 0.73 0.313594
Target:  5'- gCGCGG-CGgCCGCGGCGGcGgCGuCGGCg -3'
miRNA:   3'- -GCGCCuGUgGGCGUCGCC-CaGU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 2557 0.72 0.341778
Target:  5'- cCGCGGgagggGCGgCCGCggGGCGGGgggcguccgCGCGGCu -3'
miRNA:   3'- -GCGCC-----UGUgGGCG--UCGCCCa--------GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 2612 0.68 0.573969
Target:  5'- gCGCGGGgcgcCGCCCgGCGGCGcccuGGcCGgGGCg -3'
miRNA:   3'- -GCGCCU----GUGGG-CGUCGC----CCaGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 2684 0.72 0.332421
Target:  5'- gGCGGGCGCggcgagcgagucggCCGCGGCGacGGUguCGGCc -3'
miRNA:   3'- gCGCCUGUG--------------GGCGUCGC--CCAguGCCG- -5'
5129 3' -62.1 NC_001798.1 + 2795 0.72 0.336716
Target:  5'- gCGCGGGC-UCCGCGGCagcgccgggcccaGGGccccggcgaccaggcUCACGGCg -3'
miRNA:   3'- -GCGCCUGuGGGCGUCG-------------CCC---------------AGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 2997 0.8 0.098018
Target:  5'- cCGCGGGC-CCCGgGcGCGGGggCGCGGCg -3'
miRNA:   3'- -GCGCCUGuGGGCgU-CGCCCa-GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 3271 0.68 0.554851
Target:  5'- gGCGGGCACCgCGC-GCucGUCGgcCGGCg -3'
miRNA:   3'- gCGCCUGUGG-GCGuCGccCAGU--GCCG- -5'
5129 3' -62.1 NC_001798.1 + 3334 0.67 0.622313
Target:  5'- gGCGGGCuuCCCGCGgGCGucGUCGCcgucguGGCg -3'
miRNA:   3'- gCGCCUGu-GGGCGU-CGCc-CAGUG------CCG- -5'
5129 3' -62.1 NC_001798.1 + 3482 0.66 0.661144
Target:  5'- gCGCGGuCGua-GCGGCGGcUCAUGGCc -3'
miRNA:   3'- -GCGCCuGUgggCGUCGCCcAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 3668 0.68 0.526545
Target:  5'- -cCGGGCGCCaCGC-GCGGGuUCugGaGCc -3'
miRNA:   3'- gcGCCUGUGG-GCGuCGCCC-AGugC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.