miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 154488 0.68 0.577812
Target:  5'- cCGCGGGCGCCgccccuccccccgcgCGCcGCGGGgcugccuuccCGCGGg -3'
miRNA:   3'- -GCGCCUGUGG---------------GCGuCGCCCa---------GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 154407 0.78 0.145644
Target:  5'- gGCGGGCGgCgGCGGCGGGcggGCGGCa -3'
miRNA:   3'- gCGCCUGUgGgCGUCGCCCag-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 154129 0.81 0.084279
Target:  5'- gGCGGGgACCCcgGCGGCGGGaCAUGGCg -3'
miRNA:   3'- gCGCCUgUGGG--CGUCGCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 154079 0.67 0.632028
Target:  5'- gCGCGGcACGgCUGgAGCgccGGGgCGCGGCc -3'
miRNA:   3'- -GCGCC-UGUgGGCgUCG---CCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 154034 0.7 0.428329
Target:  5'- uGCGGuugggaGCGCgCCGgGGCGcGG-CACGGCu -3'
miRNA:   3'- gCGCC------UGUG-GGCgUCGC-CCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 153780 0.68 0.573969
Target:  5'- uGCGGcccGCGCUCcuugcgcggcgGCGGCGGGgggCagGCGGCg -3'
miRNA:   3'- gCGCC---UGUGGG-----------CGUCGCCCa--G--UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 153666 0.7 0.445408
Target:  5'- gCGCGGcGCGUCCGCgGGCGGGgaCGCGGg -3'
miRNA:   3'- -GCGCC-UGUGGGCG-UCGCCCa-GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 153488 0.73 0.293636
Target:  5'- gCGCGGcgagaagcACACCUGCgGGCGGGgagaCACGGg -3'
miRNA:   3'- -GCGCC--------UGUGGGCG-UCGCCCa---GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 153374 0.67 0.622313
Target:  5'- gGCcGcCGCCaCGCGGCGccggaaccGGUCGCGGUc -3'
miRNA:   3'- gCGcCuGUGG-GCGUCGC--------CCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 153075 0.71 0.395367
Target:  5'- gGCGGGCGga-GCGGCGGG--GCGGCg -3'
miRNA:   3'- gCGCCUGUgggCGUCGCCCagUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 153022 0.68 0.535924
Target:  5'- gGCGGAguccggGCCCGCgcGGCGGcG-CGCGGUu -3'
miRNA:   3'- gCGCCUg-----UGGGCG--UCGCC-CaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 152222 0.69 0.498797
Target:  5'- cCGgGGGuCugCCGCGGCGGccgcUCGgGGCc -3'
miRNA:   3'- -GCgCCU-GugGGCGUCGCCc---AGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 151673 0.71 0.395367
Target:  5'- cCGUGcu-GCCCGCcucggaGGUGGGUCGCGGUg -3'
miRNA:   3'- -GCGCcugUGGGCG------UCGCCCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 150845 0.77 0.164419
Target:  5'- aGgGGGCGCCgGU--CGGGUCGCGGCg -3'
miRNA:   3'- gCgCCUGUGGgCGucGCCCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 150562 0.69 0.517227
Target:  5'- aGCGGcccgGgGCCCGCggggcGGCGcGGagACGGCg -3'
miRNA:   3'- gCGCC----UgUGGGCG-----UCGC-CCagUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 150453 0.75 0.218553
Target:  5'- gCGCGGggcgACGgCCGC-GCGGGggcgCGCGGCg -3'
miRNA:   3'- -GCGCC----UGUgGGCGuCGCCCa---GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 150383 0.68 0.523743
Target:  5'- gCGCGGGCccggccgcguccgcGCUCGCAGacaccaCGGGg-GCGGCg -3'
miRNA:   3'- -GCGCCUG--------------UGGGCGUC------GCCCagUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 150173 0.69 0.471721
Target:  5'- gGCGGGCcgccGCCCccuccGCGGCGuGGgggGCGGCa -3'
miRNA:   3'- gCGCCUG----UGGG-----CGUCGC-CCag-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 150022 0.69 0.469941
Target:  5'- cCGCGGuCGCCCGaguccgagucCGGGgcccggCGCGGCg -3'
miRNA:   3'- -GCGCCuGUGGGCguc-------GCCCa-----GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 149984 0.76 0.180976
Target:  5'- gCGCGG-CGCCCGCGGacgcCGGGgcgaGCGGCc -3'
miRNA:   3'- -GCGCCuGUGGGCGUC----GCCCag--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.