miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 149650 0.68 0.526545
Target:  5'- gCGCGuGAgGCCgGgCGcCGGGUCGCGGg -3'
miRNA:   3'- -GCGC-CUgUGGgC-GUcGCCCAGUGCCg -5'
5129 3' -62.1 NC_001798.1 + 149460 0.68 0.554851
Target:  5'- uGCGGcgGCuCCaCGCGG-GGGcCGCGGCc -3'
miRNA:   3'- gCGCC--UGuGG-GCGUCgCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 149238 0.68 0.554851
Target:  5'- ---cGugGCCCGCGGgGGcGUCGcCGGCc -3'
miRNA:   3'- gcgcCugUGGGCGUCgCC-CAGU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 148417 0.71 0.403453
Target:  5'- gGUGGGCG-CCGgGGCGGGggugggCACGGg -3'
miRNA:   3'- gCGCCUGUgGGCgUCGCCCa-----GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 147010 0.7 0.419936
Target:  5'- uCGgGGACcCCCG-GGCGGGcCGgGGCu -3'
miRNA:   3'- -GCgCCUGuGGGCgUCGCCCaGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 146580 0.74 0.262599
Target:  5'- cCGCGGGC-Ca-GCAGaCGGGcCGCGGCg -3'
miRNA:   3'- -GCGCCUGuGggCGUC-GCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 146478 0.68 0.564389
Target:  5'- cCGCGGGC-UCCGgGGcCGGGcCGggcCGGCa -3'
miRNA:   3'- -GCGCCUGuGGGCgUC-GCCCaGU---GCCG- -5'
5129 3' -62.1 NC_001798.1 + 146303 0.67 0.622313
Target:  5'- aGUGGGCGgCCG-GGCGGGaggAUGGCg -3'
miRNA:   3'- gCGCCUGUgGGCgUCGCCCag-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 145899 0.72 0.349103
Target:  5'- cCGCcGccGCGCCCcacCGGCGGGaUCGCGGCg -3'
miRNA:   3'- -GCGcC--UGUGGGc--GUCGCCC-AGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 145818 0.7 0.46286
Target:  5'- aCGCGGGCG-CgGCGGCG-GUCGgGGUg -3'
miRNA:   3'- -GCGCCUGUgGgCGUCGCcCAGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 144543 0.67 0.583587
Target:  5'- uCGgGGAgACCCGCcGUGGGgg--GGCg -3'
miRNA:   3'- -GCgCCUgUGGGCGuCGCCCagugCCG- -5'
5129 3' -62.1 NC_001798.1 + 143294 0.72 0.334564
Target:  5'- aCGUagGGGCcguccGCCCcCGGCGGGUCGcCGGCc -3'
miRNA:   3'- -GCG--CCUG-----UGGGcGUCGCCCAGU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 141569 0.66 0.670816
Target:  5'- uCGCGGaggaGCugCgGCGGCGGcacgCgACGGCc -3'
miRNA:   3'- -GCGCC----UGugGgCGUCGCCca--G-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 140187 0.71 0.411644
Target:  5'- aCGCGGGcCGCCUGCGGCcGGUgcUGGUg -3'
miRNA:   3'- -GCGCCU-GUGGGCGUCGcCCAguGCCG- -5'
5129 3' -62.1 NC_001798.1 + 139542 0.68 0.526545
Target:  5'- aCGCaGGugccGCGCCUGCAGUGGuuccgggacGUgGCGGCc -3'
miRNA:   3'- -GCG-CC----UGUGGGCGUCGCC---------CAgUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 139330 0.7 0.436821
Target:  5'- uCGCcGGCGCCCGCGcGCGcugugcGGcCAUGGCg -3'
miRNA:   3'- -GCGcCUGUGGGCGU-CGC------CCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 139134 0.76 0.203256
Target:  5'- gCGUGGAagaucgcCGCCUGCAGCugucGGGUgGCGGCc -3'
miRNA:   3'- -GCGCCU-------GUGGGCGUCG----CCCAgUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 139068 0.66 0.667917
Target:  5'- cCGCGGGcCACCacgugGCGGCGccaguccuccuccaGGUCcCGGUa -3'
miRNA:   3'- -GCGCCU-GUGGg----CGUCGC--------------CCAGuGCCG- -5'
5129 3' -62.1 NC_001798.1 + 138004 0.75 0.218553
Target:  5'- uCGCGGucgcGCGCCUGCAGCuGGGUCGCc-- -3'
miRNA:   3'- -GCGCC----UGUGGGCGUCG-CCCAGUGccg -5'
5129 3' -62.1 NC_001798.1 + 137446 0.66 0.680461
Target:  5'- cCGCGGggacGCGCUCGCccggaaaucGGCGGGggUugGGg -3'
miRNA:   3'- -GCGCC----UGUGGGCG---------UCGCCCa-GugCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.