miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 32556 0.76 0.194347
Target:  5'- aCGUGGcGgACCUGCuGCGGGcCGCGGCc -3'
miRNA:   3'- -GCGCC-UgUGGGCGuCGCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 26503 0.76 0.198993
Target:  5'- gCGCGGGgACggugcuggCCGCGGCGGGcgGCGGCg -3'
miRNA:   3'- -GCGCCUgUG--------GGCGUCGCCCagUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 139134 0.76 0.203256
Target:  5'- gCGUGGAagaucgcCGCCUGCAGCugucGGGUgGCGGCc -3'
miRNA:   3'- -GCGCCU-------GUGGGCGUCG----CCCAgUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 150453 0.75 0.218553
Target:  5'- gCGCGGggcgACGgCCGC-GCGGGggcgCGCGGCg -3'
miRNA:   3'- -GCGCC----UGUgGGCGuCGCCCa---GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 138004 0.75 0.218553
Target:  5'- uCGCGGucgcGCGCCUGCAGCuGGGUCGCc-- -3'
miRNA:   3'- -GCGCC----UGUGGGCGUCG-CCCAGUGccg -5'
5129 3' -62.1 NC_001798.1 + 74813 0.75 0.228936
Target:  5'- cCGCaGACACCCGCcG-GGGaCGCGGCc -3'
miRNA:   3'- -GCGcCUGUGGGCGuCgCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 1815 0.75 0.239732
Target:  5'- cCGCGaGACcacggGCCCGuCGGCGGGccagucCGCGGCg -3'
miRNA:   3'- -GCGC-CUG-----UGGGC-GUCGCCCa-----GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 36586 0.74 0.250951
Target:  5'- gCGCGcGGCGgCCG-GGCGGGggcgCGCGGCg -3'
miRNA:   3'- -GCGC-CUGUgGGCgUCGCCCa---GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 36544 0.74 0.250951
Target:  5'- gCGCGcGGCGgCCG-GGCGGGggcgCGCGGCg -3'
miRNA:   3'- -GCGC-CUGUgGGCgUCGCCCa---GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 27562 0.74 0.256721
Target:  5'- gGCGG-CGCCCGCGG-GGGa-GCGGCc -3'
miRNA:   3'- gCGCCuGUGGGCGUCgCCCagUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 146580 0.74 0.262599
Target:  5'- cCGCGGGC-Ca-GCAGaCGGGcCGCGGCg -3'
miRNA:   3'- -GCGCCUGuGggCGUC-GCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 95699 0.74 0.262599
Target:  5'- gGCGGccggcguCGCCCGaaAGCGGGcguuUCACGGCg -3'
miRNA:   3'- gCGCCu------GUGGGCg-UCGCCC----AGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 35407 0.74 0.268586
Target:  5'- cCGcCGGAUGCCCGCGG-GGGcCuaauGCGGCg -3'
miRNA:   3'- -GC-GCCUGUGGGCGUCgCCCaG----UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 62518 0.74 0.268586
Target:  5'- uGCaGGuccccaACgCGCAGCGGGUCGCGGa -3'
miRNA:   3'- gCG-CCug----UGgGCGUCGCCCAGUGCCg -5'
5129 3' -62.1 NC_001798.1 + 2449 0.74 0.274682
Target:  5'- gGCGGcgcCAgCCGCccuGCGGGUCGgGGCc -3'
miRNA:   3'- gCGCCu--GUgGGCGu--CGCCCAGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 56402 0.73 0.280889
Target:  5'- gGUGGGguCCCGCGGCGGGggCuggUGGCu -3'
miRNA:   3'- gCGCCUguGGGCGUCGCCCa-Gu--GCCG- -5'
5129 3' -62.1 NC_001798.1 + 90702 0.73 0.293636
Target:  5'- cCGCcaGGCGCUCGCAgagaucgcGCGGGgCACGGCa -3'
miRNA:   3'- -GCGc-CUGUGGGCGU--------CGCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 153488 0.73 0.293636
Target:  5'- gCGCGGcgagaagcACACCUGCgGGCGGGgagaCACGGg -3'
miRNA:   3'- -GCGCC--------UGUGGGCG-UCGCCCa---GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 69504 0.73 0.293636
Target:  5'- gCGCaGGACGCgCCGgAGCGGGgCGUGGCc -3'
miRNA:   3'- -GCG-CCUGUG-GGCgUCGCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 56793 0.73 0.293636
Target:  5'- cCGCcGACGgCCGCGGa-GGUCACGGUg -3'
miRNA:   3'- -GCGcCUGUgGGCGUCgcCCAGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.