miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 59838 0.66 0.680461
Target:  5'- cCGCGGuCGCCCGCguccGGCucggaggaGGaGUCcUGGCu -3'
miRNA:   3'- -GCGCCuGUGGGCG----UCG--------CC-CAGuGCCG- -5'
5129 3' -62.1 NC_001798.1 + 88113 0.66 0.680461
Target:  5'- cCGCGcGACcgucuccucuACCUc--GCGGGUCugGGCc -3'
miRNA:   3'- -GCGC-CUG----------UGGGcguCGCCCAGugCCG- -5'
5129 3' -62.1 NC_001798.1 + 37188 0.66 0.680461
Target:  5'- nCGCGccaGGCGCCgCGCcgaacGaCGGG-CGCGGCg -3'
miRNA:   3'- -GCGC---CUGUGG-GCGu----C-GCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 137446 0.66 0.680461
Target:  5'- cCGCGGggacGCGCUCGCccggaaaucGGCGGGggUugGGg -3'
miRNA:   3'- -GCGCC----UGUGGGCG---------UCGCCCa-GugCCg -5'
5129 3' -62.1 NC_001798.1 + 141569 0.66 0.670816
Target:  5'- uCGCGGaggaGCugCgGCGGCGGcacgCgACGGCc -3'
miRNA:   3'- -GCGCC----UGugGgCGUCGCCca--G-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 83351 0.66 0.670816
Target:  5'- cCGCGGcguCGCCCGCGaacauaggcuGCGGGgCGaacguguuguUGGCg -3'
miRNA:   3'- -GCGCCu--GUGGGCGU----------CGCCCaGU----------GCCG- -5'
5129 3' -62.1 NC_001798.1 + 59985 0.66 0.670816
Target:  5'- cCGCcGACACCgCGUuggGGCcGGUgGCGGUg -3'
miRNA:   3'- -GCGcCUGUGG-GCG---UCGcCCAgUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 31239 0.66 0.66985
Target:  5'- aGCGGcgGCGcCCCGUugcgGGCGGGggugggaUCugGGUc -3'
miRNA:   3'- gCGCC--UGU-GGGCG----UCGCCC-------AGugCCG- -5'
5129 3' -62.1 NC_001798.1 + 43127 0.66 0.66985
Target:  5'- gGCGGGCGcgcguCCCGCGucacGCGGGcccagUCgucccgcgccgccGCGGCa -3'
miRNA:   3'- gCGCCUGU-----GGGCGU----CGCCC-----AG-------------UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 139068 0.66 0.667917
Target:  5'- cCGCGGGcCACCacgugGCGGCGccaguccuccuccaGGUCcCGGUa -3'
miRNA:   3'- -GCGCCU-GUGGg----CGUCGC--------------CCAGuGCCG- -5'
5129 3' -62.1 NC_001798.1 + 1512 0.66 0.661144
Target:  5'- gGCGGcgGCCCGgccgucCAGCGccGGgagCACGGCg -3'
miRNA:   3'- gCGCCugUGGGC------GUCGC--CCa--GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 93451 0.66 0.661144
Target:  5'- gGCGGcCaACCCGCAGCuggaccgcgaGGGcCACguGGUg -3'
miRNA:   3'- gCGCCuG-UGGGCGUCG----------CCCaGUG--CCG- -5'
5129 3' -62.1 NC_001798.1 + 3482 0.66 0.661144
Target:  5'- gCGCGGuCGua-GCGGCGGcUCAUGGCc -3'
miRNA:   3'- -GCGCCuGUgggCGUCGCCcAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 43447 0.66 0.661144
Target:  5'- gGUGGACGagucugcgacCCCGCAguacGCGGGg-GCGGg -3'
miRNA:   3'- gCGCCUGU----------GGGCGU----CGCCCagUGCCg -5'
5129 3' -62.1 NC_001798.1 + 44283 0.66 0.661144
Target:  5'- gGCGGuGCugCCGCugccgauGCGGGcgGgGGCg -3'
miRNA:   3'- gCGCC-UGugGGCGu------CGCCCagUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 112545 0.66 0.661144
Target:  5'- gCGCGuGcCGCCCGCGcGUaGGGUUGUGGCc -3'
miRNA:   3'- -GCGC-CuGUGGGCGU-CG-CCCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 119354 0.66 0.660175
Target:  5'- aCGCaGGCugCCGCuuuacgaGGCGcuGGUCGCcuGGCu -3'
miRNA:   3'- -GCGcCUGugGGCG-------UCGC--CCAGUG--CCG- -5'
5129 3' -62.1 NC_001798.1 + 52379 0.66 0.659206
Target:  5'- cCGCGG-CGCgCCGCcugcucgccaccAGCGGGcugaacgccgugCugGGCg -3'
miRNA:   3'- -GCGCCuGUG-GGCG------------UCGCCCa-----------GugCCG- -5'
5129 3' -62.1 NC_001798.1 + 36621 0.66 0.65145
Target:  5'- gGCGGGgGCgCGCGGCGGccggGCGGg -3'
miRNA:   3'- gCGCCUgUGgGCGUCGCCcag-UGCCg -5'
5129 3' -62.1 NC_001798.1 + 23928 0.66 0.65145
Target:  5'- gGCGccccGGCGCCCGUgugggcgccgAGCuGGGcgaCGCGGCg -3'
miRNA:   3'- gCGC----CUGUGGGCG----------UCG-CCCa--GUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.