miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 3896 0.68 0.573969
Target:  5'- gGCgGGGgGCCgGCccCGGGcCACGGCu -3'
miRNA:   3'- gCG-CCUgUGGgCGucGCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 3996 0.67 0.583587
Target:  5'- cCGgGGcCGCCCGgccgugaAGCGGcccguggcGUCGCGGCc -3'
miRNA:   3'- -GCgCCuGUGGGCg------UCGCC--------CAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 4048 0.7 0.423282
Target:  5'- gCGCGGGC-CCgGCGGCGcuccaggcggcccgcGGUCGCcGCg -3'
miRNA:   3'- -GCGCCUGuGGgCGUCGC---------------CCAGUGcCG- -5'
5129 3' -62.1 NC_001798.1 + 4104 0.68 0.573969
Target:  5'- gGCGGGCucgGCCCugGGCGGG-CuCGGCc -3'
miRNA:   3'- gCGCCUG---UGGGcgUCGCCCaGuGCCG- -5'
5129 3' -62.1 NC_001798.1 + 4183 0.77 0.160497
Target:  5'- gCGCcgaGGGuccCGCCCGCGGCGuGGUCuGCGGCg -3'
miRNA:   3'- -GCG---CCU---GUGGGCGUCGC-CCAG-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 4350 0.71 0.379511
Target:  5'- gGCGGccgaGCGCCgGCGGgGGGcgCGcCGGCg -3'
miRNA:   3'- gCGCC----UGUGGgCGUCgCCCa-GU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 4409 0.68 0.545361
Target:  5'- gGCgGGGCGCC----GgGGGUCGCGGCg -3'
miRNA:   3'- gCG-CCUGUGGgcguCgCCCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 4489 0.69 0.480665
Target:  5'- cCGCGGAC-CCaGCGGCccgcGUCGCGGUc -3'
miRNA:   3'- -GCGCCUGuGGgCGUCGcc--CAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 4767 0.7 0.454089
Target:  5'- gGCaucGGCAUCgGCGGCGGcGUCGuCGGCc -3'
miRNA:   3'- gCGc--CUGUGGgCGUCGCC-CAGU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 4837 0.67 0.622313
Target:  5'- -cCGGGC-CgCGCGGCGGGgcgACGGUc -3'
miRNA:   3'- gcGCCUGuGgGCGUCGCCCag-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 5355 0.67 0.593236
Target:  5'- gCGCGGccccgccccgACGCCCGCGcguccGCGuccGUgGCGGCg -3'
miRNA:   3'- -GCGCC----------UGUGGGCGU-----CGCc--CAgUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 5614 0.7 0.436821
Target:  5'- cCGCGGGCGgcUCCGCcccaaagggGGCGGGgccgCAgGGUa -3'
miRNA:   3'- -GCGCCUGU--GGGCG---------UCGCCCa---GUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 5895 0.68 0.545361
Target:  5'- cCGCGGGCuccgcCCCGaGGCGGGcC-CGGa -3'
miRNA:   3'- -GCGCCUGu----GGGCgUCGCCCaGuGCCg -5'
5129 3' -62.1 NC_001798.1 + 5984 0.68 0.564389
Target:  5'- aGgGGACACCggcugCGCGGCGGaGaCcgggACGGCa -3'
miRNA:   3'- gCgCCUGUGG-----GCGUCGCC-CaG----UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 7177 0.71 0.379511
Target:  5'- cCGaCGGGCcCCCGCAcCGGG--GCGGCg -3'
miRNA:   3'- -GC-GCCUGuGGGCGUcGCCCagUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 9135 0.73 0.300177
Target:  5'- gGUGGuCugCgGCAcGCGGG-CGCGGCg -3'
miRNA:   3'- gCGCCuGugGgCGU-CGCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 9599 0.68 0.564389
Target:  5'- aCGCGGACAgCCCGagGGCGGccagcaaCAgGGCc -3'
miRNA:   3'- -GCGCCUGU-GGGCg-UCGCCca-----GUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 9658 0.68 0.535924
Target:  5'- aGCGGGcCGCgCGCGGaGGG-CGCGGg -3'
miRNA:   3'- gCGCCU-GUGgGCGUCgCCCaGUGCCg -5'
5129 3' -62.1 NC_001798.1 + 15271 0.69 0.498797
Target:  5'- gGCGG-UGCCCcggguuccgggcGUGGCGguGGUCGCGGCg -3'
miRNA:   3'- gCGCCuGUGGG------------CGUCGC--CCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 15388 0.66 0.699634
Target:  5'- gGCGGagGCGCCCaccggacccgggGUuGCGGGUC-CGGg -3'
miRNA:   3'- gCGCC--UGUGGG------------CGuCGCCCAGuGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.