miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 16172 0.67 0.602911
Target:  5'- -aCGGGCgGCCCGCGGggacCGGGgggacgCACGGg -3'
miRNA:   3'- gcGCCUG-UGGGCGUC----GCCCa-----GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 17117 0.69 0.507977
Target:  5'- -cCGGcCGCCCGCgAGCGGuaGUgCGCGGUg -3'
miRNA:   3'- gcGCCuGUGGGCG-UCGCC--CA-GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 19842 0.72 0.35654
Target:  5'- gCGCGacacGCGCCCGgGGCGGGUa--GGCc -3'
miRNA:   3'- -GCGCc---UGUGGGCgUCGCCCAgugCCG- -5'
5129 3' -62.1 NC_001798.1 + 20287 0.71 0.387386
Target:  5'- gCGCGG-C-CCCa-GGCGGGUC-CGGCa -3'
miRNA:   3'- -GCGCCuGuGGGcgUCGCCCAGuGCCG- -5'
5129 3' -62.1 NC_001798.1 + 20349 0.71 0.371745
Target:  5'- gGCGGuuggcGCugCCG-GGCGGGUUcgggGCGGCa -3'
miRNA:   3'- gCGCC-----UGugGGCgUCGCCCAG----UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 20564 0.66 0.699634
Target:  5'- uCGgGGAaaaccaCACCCGCAcGCcGGUCGgGGg -3'
miRNA:   3'- -GCgCCU------GUGGGCGU-CGcCCAGUgCCg -5'
5129 3' -62.1 NC_001798.1 + 21818 0.69 0.486976
Target:  5'- gGCGGA-GCCCGCGGgaugacgcgggcccCGGG-CAgGGCg -3'
miRNA:   3'- gCGCCUgUGGGCGUC--------------GCCCaGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 22095 0.69 0.489692
Target:  5'- gGCGGAgcCGCCCGCGGaccaaCGGGgcgaccUCGcCGGCc -3'
miRNA:   3'- gCGCCU--GUGGGCGUC-----GCCC------AGU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 22268 0.67 0.593236
Target:  5'- gCGcCGGGCGCuaaugagaugCCGC-GCGGGcggaGCGGCg -3'
miRNA:   3'- -GC-GCCUGUG----------GGCGuCGCCCag--UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 22337 0.67 0.632028
Target:  5'- aCGCGGACGCgCGgGcGuCGGGgCGgGGCc -3'
miRNA:   3'- -GCGCCUGUGgGCgU-C-GCCCaGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 22391 0.69 0.489692
Target:  5'- gGCGGAaccCCgGCgAGcCGGGgCGCGGCg -3'
miRNA:   3'- gCGCCUgu-GGgCG-UC-GCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 23509 0.66 0.690069
Target:  5'- cCGCaGAcCACgCCGCgGGCGGGaCccuCGGCg -3'
miRNA:   3'- -GCGcCU-GUG-GGCG-UCGCCCaGu--GCCG- -5'
5129 3' -62.1 NC_001798.1 + 23555 0.66 0.65145
Target:  5'- gGCGGGggUGCCCGCgagGGCcccGGGg-GCGGCg -3'
miRNA:   3'- gCGCCU--GUGGGCG---UCG---CCCagUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 23644 0.71 0.371745
Target:  5'- cCGCGGGcCGCCUGgAGCGccgccGGgcccgCGCGGCg -3'
miRNA:   3'- -GCGCCU-GUGGGCgUCGC-----CCa----GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 23714 0.72 0.359546
Target:  5'- gGcCGGGCgGCCC-CGGCGGGUCgagcuggacgccgacGCGGCc -3'
miRNA:   3'- gC-GCCUG-UGGGcGUCGCCCAG---------------UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 23832 0.67 0.593236
Target:  5'- cCG-GGGCGCgUGCuguacGGCGGG-CugGGCg -3'
miRNA:   3'- -GCgCCUGUGgGCG-----UCGCCCaGugCCG- -5'
5129 3' -62.1 NC_001798.1 + 23881 0.71 0.403453
Target:  5'- gGgGGGCGCCCGaGGCGGaGgaggCGCGGg -3'
miRNA:   3'- gCgCCUGUGGGCgUCGCC-Ca---GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 23928 0.66 0.65145
Target:  5'- gGCGccccGGCGCCCGUgugggcgccgAGCuGGGcgaCGCGGCg -3'
miRNA:   3'- gCGC----CUGUGGGCG----------UCG-CCCa--GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 24156 0.67 0.583587
Target:  5'- uGgGGuACGCCaugGCGGCGGGcCGCuucGGCu -3'
miRNA:   3'- gCgCC-UGUGGg--CGUCGCCCaGUG---CCG- -5'
5129 3' -62.1 NC_001798.1 + 24393 0.66 0.680461
Target:  5'- cCGCcGcCGCCCcguugccgucgGCGGCGGcGUCGcCGGCc -3'
miRNA:   3'- -GCGcCuGUGGG-----------CGUCGCC-CAGU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.