miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 1341 0.66 0.699634
Target:  5'- cCGCGG-C-CCgCGCAGCuccgccGGGccgccgcgCACGGCg -3'
miRNA:   3'- -GCGCCuGuGG-GCGUCG------CCCa-------GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 77248 0.66 0.699634
Target:  5'- gGCGGACGCggUGuCGGCccuGGG-CGCGGCc -3'
miRNA:   3'- gCGCCUGUGg-GC-GUCG---CCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 86429 0.66 0.699634
Target:  5'- gGCGGACcccgaggcgcaGCCCGgGGaCGGGggC-CGGUu -3'
miRNA:   3'- gCGCCUG-----------UGGGCgUC-GCCCa-GuGCCG- -5'
5129 3' -62.1 NC_001798.1 + 93932 0.66 0.699634
Target:  5'- gCGCGGcCA-CCG-AGCGcGUCAUGGCc -3'
miRNA:   3'- -GCGCCuGUgGGCgUCGCcCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 28610 0.66 0.699634
Target:  5'- cCGCGcGCcugGCCCGaCGG-GGGUcCugGGCg -3'
miRNA:   3'- -GCGCcUG---UGGGC-GUCgCCCA-GugCCG- -5'
5129 3' -62.1 NC_001798.1 + 58987 0.66 0.690069
Target:  5'- gGcCGGGCGaaCGCGGgGGGggCGCGGa -3'
miRNA:   3'- gC-GCCUGUggGCGUCgCCCa-GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 25130 0.66 0.687191
Target:  5'- gCGCGGACGCCCcccgccccGCGGCcgccccucccgcggGGGcCGCGc- -3'
miRNA:   3'- -GCGCCUGUGGG--------CGUCG--------------CCCaGUGCcg -5'
5129 3' -62.1 NC_001798.1 + 31239 0.66 0.66985
Target:  5'- aGCGGcgGCGcCCCGUugcgGGCGGGggugggaUCugGGUc -3'
miRNA:   3'- gCGCC--UGU-GGGCG----UCGCCC-------AGugCCG- -5'
5129 3' -62.1 NC_001798.1 + 43127 0.66 0.66985
Target:  5'- gGCGGGCGcgcguCCCGCGucacGCGGGcccagUCgucccgcgccgccGCGGCa -3'
miRNA:   3'- gCGCCUGU-----GGGCGU----CGCCC-----AG-------------UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 59985 0.66 0.670816
Target:  5'- cCGCcGACACCgCGUuggGGCcGGUgGCGGUg -3'
miRNA:   3'- -GCGcCUGUGG-GCG---UCGcCCAgUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 83351 0.66 0.670816
Target:  5'- cCGCGGcguCGCCCGCGaacauaggcuGCGGGgCGaacguguuguUGGCg -3'
miRNA:   3'- -GCGCCu--GUGGGCGU----------CGCCCaGU----------GCCG- -5'
5129 3' -62.1 NC_001798.1 + 141569 0.66 0.670816
Target:  5'- uCGCGGaggaGCugCgGCGGCGGcacgCgACGGCc -3'
miRNA:   3'- -GCGCC----UGugGgCGUCGCCca--G-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 24393 0.66 0.680461
Target:  5'- cCGCcGcCGCCCcguugccgucgGCGGCGGcGUCGcCGGCc -3'
miRNA:   3'- -GCGcCuGUGGG-----------CGUCGCC-CAGU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 34093 0.66 0.680461
Target:  5'- gGgGGugACCgGCGcGUGGGg-GCGGUg -3'
miRNA:   3'- gCgCCugUGGgCGU-CGCCCagUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 34987 0.66 0.680461
Target:  5'- uGCGGGgGCCCcucCGGcCGGGgcgCAccuCGGCg -3'
miRNA:   3'- gCGCCUgUGGGc--GUC-GCCCa--GU---GCCG- -5'
5129 3' -62.1 NC_001798.1 + 59838 0.66 0.680461
Target:  5'- cCGCGGuCGCCCGCguccGGCucggaggaGGaGUCcUGGCu -3'
miRNA:   3'- -GCGCCuGUGGGCG----UCG--------CC-CAGuGCCG- -5'
5129 3' -62.1 NC_001798.1 + 88113 0.66 0.680461
Target:  5'- cCGCGcGACcgucuccucuACCUc--GCGGGUCugGGCc -3'
miRNA:   3'- -GCGC-CUG----------UGGGcguCGCCCAGugCCG- -5'
5129 3' -62.1 NC_001798.1 + 37188 0.66 0.680461
Target:  5'- nCGCGccaGGCGCCgCGCcgaacGaCGGG-CGCGGCg -3'
miRNA:   3'- -GCGC---CUGUGG-GCGu----C-GCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 137446 0.66 0.680461
Target:  5'- cCGCGGggacGCGCUCGCccggaaaucGGCGGGggUugGGg -3'
miRNA:   3'- -GCGCC----UGUGGGCG---------UCGCCCa-GugCCg -5'
5129 3' -62.1 NC_001798.1 + 79282 0.66 0.684309
Target:  5'- cCGCGGACcuggcCCCGUGGgcgguggaggaguucCGGGgcgCGCGGg -3'
miRNA:   3'- -GCGCCUGu----GGGCGUC---------------GCCCa--GUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.