miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 9135 0.73 0.300177
Target:  5'- gGUGGuCugCgGCAcGCGGG-CGCGGCg -3'
miRNA:   3'- gCGCCuGugGgCGU-CGCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 127923 0.73 0.300177
Target:  5'- aCGUGGGCaACCCGaCGGCGGGgcccCG-GGCg -3'
miRNA:   3'- -GCGCCUG-UGGGC-GUCGCCCa---GUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 51281 0.73 0.306829
Target:  5'- aCGCGGGC-CCCGCGGgGaGGcuacCugGGCc -3'
miRNA:   3'- -GCGCCUGuGGGCGUCgC-CCa---GugCCG- -5'
5129 3' -62.1 NC_001798.1 + 77215 0.73 0.306829
Target:  5'- gGUGGACGCggCCGU-GCGGGcgCAUGGCg -3'
miRNA:   3'- gCGCCUGUG--GGCGuCGCCCa-GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 57376 0.73 0.309522
Target:  5'- -uCGGauuuGCACCCGCgagccguaccgggccAGCGGGUCGUGGCg -3'
miRNA:   3'- gcGCC----UGUGGGCG---------------UCGCCCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 2510 0.73 0.313594
Target:  5'- gCGCGG-CGgCCGCGGCGGcGgCGuCGGCg -3'
miRNA:   3'- -GCGCCuGUgGGCGUCGCC-CaGU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 113635 0.72 0.327462
Target:  5'- gCGCGGcCgGCgCCGCcauGUGGGUgGCGGCg -3'
miRNA:   3'- -GCGCCuG-UG-GGCGu--CGCCCAgUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 109952 0.72 0.330289
Target:  5'- gGCGGACgucauggcacaacagACCCGCGGCGuGGccuccguucUCACGcGCu -3'
miRNA:   3'- gCGCCUG---------------UGGGCGUCGC-CC---------AGUGC-CG- -5'
5129 3' -62.1 NC_001798.1 + 2684 0.72 0.332421
Target:  5'- gGCGGGCGCggcgagcgagucggCCGCGGCGacGGUguCGGCc -3'
miRNA:   3'- gCGCCUGUG--------------GGCGUCGC--CCAguGCCG- -5'
5129 3' -62.1 NC_001798.1 + 26351 0.72 0.333848
Target:  5'- gCGCGGcgGCCCgGCGgagcugcGCGGGcCGCGGCg -3'
miRNA:   3'- -GCGCCugUGGG-CGU-------CGCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 27516 0.72 0.334564
Target:  5'- gCGgGGGCGCCCGCGGgaaGGcagcccCGCGGCg -3'
miRNA:   3'- -GCgCCUGUGGGCGUCg--CCca----GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 31348 0.72 0.334564
Target:  5'- gGCGcGCGCaggCGCGGCGGGUgggcgaagacgcCGCGGCg -3'
miRNA:   3'- gCGCcUGUGg--GCGUCGCCCA------------GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 143294 0.72 0.334564
Target:  5'- aCGUagGGGCcguccGCCCcCGGCGGGUCGcCGGCc -3'
miRNA:   3'- -GCG--CCUG-----UGGGcGUCGCCCAGU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 104455 0.72 0.334564
Target:  5'- gGCGGuCGCCCGCAGCaGcGUC-UGGUc -3'
miRNA:   3'- gCGCCuGUGGGCGUCGcC-CAGuGCCG- -5'
5129 3' -62.1 NC_001798.1 + 2795 0.72 0.336716
Target:  5'- gCGCGGGC-UCCGCGGCagcgccgggcccaGGGccccggcgaccaggcUCACGGCg -3'
miRNA:   3'- -GCGCCUGuGGGCGUCG-------------CCC---------------AGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 2557 0.72 0.341778
Target:  5'- cCGCGGgagggGCGgCCGCggGGCGGGgggcguccgCGCGGCu -3'
miRNA:   3'- -GCGCC-----UGUgGGCG--UCGCCCa--------GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 28381 0.72 0.349103
Target:  5'- cCGCGGACGCgCCGC-GCGGGaa--GGUa -3'
miRNA:   3'- -GCGCCUGUG-GGCGuCGCCCagugCCG- -5'
5129 3' -62.1 NC_001798.1 + 145899 0.72 0.349103
Target:  5'- cCGCcGccGCGCCCcacCGGCGGGaUCGCGGCg -3'
miRNA:   3'- -GCGcC--UGUGGGc--GUCGCCC-AGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 19842 0.72 0.35654
Target:  5'- gCGCGacacGCGCCCGgGGCGGGUa--GGCc -3'
miRNA:   3'- -GCGCc---UGUGGGCgUCGCCCAgugCCG- -5'
5129 3' -62.1 NC_001798.1 + 74044 0.72 0.35654
Target:  5'- gCGCGGcgGCCUGCGuugcguguuuucGCGGGUgUACGGCg -3'
miRNA:   3'- -GCGCCugUGGGCGU------------CGCCCA-GUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.