miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 23928 0.66 0.65145
Target:  5'- gGCGccccGGCGCCCGUgugggcgccgAGCuGGGcgaCGCGGCg -3'
miRNA:   3'- gCGC----CUGUGGGCG----------UCG-CCCa--GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 36621 0.66 0.65145
Target:  5'- gGCGGGgGCgCGCGGCGGccggGCGGg -3'
miRNA:   3'- gCGCCUgUGgGCGUCGCCcag-UGCCg -5'
5129 3' -62.1 NC_001798.1 + 123852 0.66 0.65145
Target:  5'- uCGCGGACgaGCCCGUGGCccacgagcUCgACGGCg -3'
miRNA:   3'- -GCGCCUG--UGGGCGUCGccc-----AG-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 97733 0.66 0.650479
Target:  5'- gCGCGGGgaGCUCGagaagaugcuGCGGGUCagcguccACGGCg -3'
miRNA:   3'- -GCGCCUg-UGGGCgu--------CGCCCAG-------UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 136805 0.66 0.648539
Target:  5'- aGCGGACgcgcucgaagggagACgCGUGGCGGGcCACGa- -3'
miRNA:   3'- gCGCCUG--------------UGgGCGUCGCCCaGUGCcg -5'
5129 3' -62.1 NC_001798.1 + 124248 0.66 0.641742
Target:  5'- -uCGGGCAcCCCGUGGaCGcGGUUauccuGCGGCa -3'
miRNA:   3'- gcGCCUGU-GGGCGUC-GC-CCAG-----UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 72901 0.66 0.641742
Target:  5'- aCGUGGAaggGCCUGCAGaCGgagcgcgcgcuGGUCGUGGCg -3'
miRNA:   3'- -GCGCCUg--UGGGCGUC-GC-----------CCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 109543 0.66 0.641742
Target:  5'- -uUGGACAgcCCCGCGGCcuauGG-CGCGGUg -3'
miRNA:   3'- gcGCCUGU--GGGCGUCGc---CCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 75109 0.66 0.641742
Target:  5'- -cCGGAUAccccCCCGCAGUccGGG-CAgGGCg -3'
miRNA:   3'- gcGCCUGU----GGGCGUCG--CCCaGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 121503 0.67 0.635914
Target:  5'- gCGUGcGACGCCCaaGGCGuGuacgacccguacacgGUCGCGGCg -3'
miRNA:   3'- -GCGC-CUGUGGGcgUCGC-C---------------CAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 77588 0.67 0.632028
Target:  5'- aGCGGGCGcgcCCUGCAGgagcUGGGcaaggUCAuCGGCg -3'
miRNA:   3'- gCGCCUGU---GGGCGUC----GCCC-----AGU-GCCG- -5'
5129 3' -62.1 NC_001798.1 + 69169 0.67 0.632028
Target:  5'- gGCGGA-GCCCGaUGGCGGGcCA-GGUg -3'
miRNA:   3'- gCGCCUgUGGGC-GUCGCCCaGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 76072 0.67 0.632028
Target:  5'- uGCGGAUccagGCCCGCcgggcgaucgagAGCGcGGUCAaGGa -3'
miRNA:   3'- gCGCCUG----UGGGCG------------UCGC-CCAGUgCCg -5'
5129 3' -62.1 NC_001798.1 + 154079 0.67 0.632028
Target:  5'- gCGCGGcACGgCUGgAGCgccGGGgCGCGGCc -3'
miRNA:   3'- -GCGCC-UGUgGGCgUCG---CCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 22337 0.67 0.632028
Target:  5'- aCGCGGACGCgCGgGcGuCGGGgCGgGGCc -3'
miRNA:   3'- -GCGCCUGUGgGCgU-C-GCCCaGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 51793 0.67 0.632028
Target:  5'- gGUGGACGCCauCGU-GCGGGUgGCGa- -3'
miRNA:   3'- gCGCCUGUGG--GCGuCGCCCAgUGCcg -5'
5129 3' -62.1 NC_001798.1 + 1199 0.67 0.622313
Target:  5'- cCGCGGcCAgcaccgucCCCGC-GCGGccCGCGGCc -3'
miRNA:   3'- -GCGCCuGU--------GGGCGuCGCCcaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 153374 0.67 0.622313
Target:  5'- gGCcGcCGCCaCGCGGCGccggaaccGGUCGCGGUc -3'
miRNA:   3'- gCGcCuGUGG-GCGUCGC--------CCAGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 146303 0.67 0.622313
Target:  5'- aGUGGGCGgCCG-GGCGGGaggAUGGCg -3'
miRNA:   3'- gCGCCUGUgGGCgUCGCCCag-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 126597 0.67 0.622313
Target:  5'- -cCGGG-GCCCGCAGCuucgggggcucgGGGgggUACGGCg -3'
miRNA:   3'- gcGCCUgUGGGCGUCG------------CCCa--GUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.