Results 41 - 60 of 295 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5129 | 3' | -62.1 | NC_001798.1 | + | 34987 | 0.66 | 0.680461 |
Target: 5'- uGCGGGgGCCCcucCGGcCGGGgcgCAccuCGGCg -3' miRNA: 3'- gCGCCUgUGGGc--GUC-GCCCa--GU---GCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 59838 | 0.66 | 0.680461 |
Target: 5'- cCGCGGuCGCCCGCguccGGCucggaggaGGaGUCcUGGCu -3' miRNA: 3'- -GCGCCuGUGGGCG----UCG--------CC-CAGuGCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 88113 | 0.66 | 0.680461 |
Target: 5'- cCGCGcGACcgucuccucuACCUc--GCGGGUCugGGCc -3' miRNA: 3'- -GCGC-CUG----------UGGGcguCGCCCAGugCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 37188 | 0.66 | 0.680461 |
Target: 5'- nCGCGccaGGCGCCgCGCcgaacGaCGGG-CGCGGCg -3' miRNA: 3'- -GCGC---CUGUGG-GCGu----C-GCCCaGUGCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 137446 | 0.66 | 0.680461 |
Target: 5'- cCGCGGggacGCGCUCGCccggaaaucGGCGGGggUugGGg -3' miRNA: 3'- -GCGCC----UGUGGGCG---------UCGCCCa-GugCCg -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 79282 | 0.66 | 0.684309 |
Target: 5'- cCGCGGACcuggcCCCGUGGgcgguggaggaguucCGGGgcgCGCGGg -3' miRNA: 3'- -GCGCCUGu----GGGCGUC---------------GCCCa--GUGCCg -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 25130 | 0.66 | 0.687191 |
Target: 5'- gCGCGGACGCCCcccgccccGCGGCcgccccucccgcggGGGcCGCGc- -3' miRNA: 3'- -GCGCCUGUGGG--------CGUCG--------------CCCaGUGCcg -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 58987 | 0.66 | 0.690069 |
Target: 5'- gGcCGGGCGaaCGCGGgGGGggCGCGGa -3' miRNA: 3'- gC-GCCUGUggGCGUCgCCCa-GUGCCg -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 137166 | 0.66 | 0.690069 |
Target: 5'- gCGCaGGACGCUgGUcGCGGuaaacCGCGGCu -3' miRNA: 3'- -GCG-CCUGUGGgCGuCGCCca---GUGCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 4837 | 0.67 | 0.622313 |
Target: 5'- -cCGGGC-CgCGCGGCGGGgcgACGGUc -3' miRNA: 3'- gcGCCUGuGgGCGUCGCCCag-UGCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 1199 | 0.67 | 0.622313 |
Target: 5'- cCGCGGcCAgcaccgucCCCGC-GCGGccCGCGGCc -3' miRNA: 3'- -GCGCCuGU--------GGGCGuCGCCcaGUGCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 153374 | 0.67 | 0.622313 |
Target: 5'- gGCcGcCGCCaCGCGGCGccggaaccGGUCGCGGUc -3' miRNA: 3'- gCGcCuGUGG-GCGUCGC--------CCAGUGCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 146303 | 0.67 | 0.622313 |
Target: 5'- aGUGGGCGgCCG-GGCGGGaggAUGGCg -3' miRNA: 3'- gCGCCUGUgGGCgUCGCCCag-UGCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 77588 | 0.67 | 0.632028 |
Target: 5'- aGCGGGCGcgcCCUGCAGgagcUGGGcaaggUCAuCGGCg -3' miRNA: 3'- gCGCCUGU---GGGCGUC----GCCC-----AGU-GCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 69169 | 0.67 | 0.632028 |
Target: 5'- gGCGGA-GCCCGaUGGCGGGcCA-GGUg -3' miRNA: 3'- gCGCCUgUGGGC-GUCGCCCaGUgCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 76072 | 0.67 | 0.632028 |
Target: 5'- uGCGGAUccagGCCCGCcgggcgaucgagAGCGcGGUCAaGGa -3' miRNA: 3'- gCGCCUG----UGGGCG------------UCGC-CCAGUgCCg -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 154079 | 0.67 | 0.632028 |
Target: 5'- gCGCGGcACGgCUGgAGCgccGGGgCGCGGCc -3' miRNA: 3'- -GCGCC-UGUgGGCgUCG---CCCaGUGCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 22337 | 0.67 | 0.632028 |
Target: 5'- aCGCGGACGCgCGgGcGuCGGGgCGgGGCc -3' miRNA: 3'- -GCGCCUGUGgGCgU-C-GCCCaGUgCCG- -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 51793 | 0.67 | 0.632028 |
Target: 5'- gGUGGACGCCauCGU-GCGGGUgGCGa- -3' miRNA: 3'- gCGCCUGUGG--GCGuCGCCCAgUGCcg -5' |
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5129 | 3' | -62.1 | NC_001798.1 | + | 126597 | 0.67 | 0.622313 |
Target: 5'- -cCGGG-GCCCGCAGCuucgggggcucgGGGgggUACGGCg -3' miRNA: 3'- gcGCCUgUGGGCGUCG------------CCCa--GUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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