Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 5129 | 5' | -56.1 | NC_001798.1 | + | 27480 | 0.67 | 0.85938 |
|
Target: 5'- cCUGCCGCGCGGggGCGGgcGCg---- -3' miRNA: 3'- -GACGGCGCGCCgaUGCUgaUGaagca -5' |
|||||||
| 5129 | 5' | -56.1 | NC_001798.1 | + | 24618 | 0.67 | 0.874287 |
|
Target: 5'- cCUGCCGCGggauccuggaGGCgcugGCGGaggGCUUCGa -3' miRNA: 3'- -GACGGCGCg---------CCGa---UGCUga-UGAAGCa -5' |
|||||||
| 5129 | 5' | -56.1 | NC_001798.1 | + | 26089 | 0.67 | 0.881419 |
|
Target: 5'- uCUGCCGCGgGGCcaacgUGCGG-UACcgCGUg -3' miRNA: 3'- -GACGGCGCgCCG-----AUGCUgAUGaaGCA- -5' |
|||||||
| 5129 | 5' | -56.1 | NC_001798.1 | + | 128587 | 0.66 | 0.89036 |
|
Target: 5'- -gGCCGCGCGGacgcgggcgucaacgACGACgccgacgccgggcGCUUCGUc -3' miRNA: 3'- gaCGGCGCGCCga-------------UGCUGa------------UGAAGCA- -5' |
|||||||
| 5129 | 5' | -56.1 | NC_001798.1 | + | 3304 | 0.66 | 0.900839 |
|
Target: 5'- -cGCCGCcgacggcaacgggGCGGCggcgGCGGCggGCUUCc- -3' miRNA: 3'- gaCGGCG-------------CGCCGa---UGCUGa-UGAAGca -5' |
|||||||
| 5129 | 5' | -56.1 | NC_001798.1 | + | 121685 | 0.66 | 0.913103 |
|
Target: 5'- -cGUCGCGCGGCUgggggccGCGGCUcccgccGCcgCGa -3' miRNA: 3'- gaCGGCGCGCCGA-------UGCUGA------UGaaGCa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home