Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5129 | 5' | -56.1 | NC_001798.1 | + | 116034 | 0.67 | 0.843655 |
Target: 5'- -cGCgaUGCGCGGCguucgugaACGACUACUcgcuggucUCGUa -3' miRNA: 3'- gaCG--GCGCGCCGa-------UGCUGAUGA--------AGCA- -5' |
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5129 | 5' | -56.1 | NC_001798.1 | + | 117210 | 0.72 | 0.583809 |
Target: 5'- -cGUCGUGCGGC-AgGACcGCUUCGUg -3' miRNA: 3'- gaCGGCGCGCCGaUgCUGaUGAAGCA- -5' |
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5129 | 5' | -56.1 | NC_001798.1 | + | 121685 | 0.66 | 0.913103 |
Target: 5'- -cGUCGCGCGGCUgggggccGCGGCUcccgccGCcgCGa -3' miRNA: 3'- gaCGGCGCGCCGA-------UGCUGA------UGaaGCa -5' |
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5129 | 5' | -56.1 | NC_001798.1 | + | 128587 | 0.66 | 0.89036 |
Target: 5'- -gGCCGCGCGGacgcgggcgucaacgACGACgccgacgccgggcGCUUCGUc -3' miRNA: 3'- gaCGGCGCGCCga-------------UGCUGa------------UGAAGCA- -5' |
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5129 | 5' | -56.1 | NC_001798.1 | + | 134700 | 1.08 | 0.00348 |
Target: 5'- gCUGCCGCGCGGCUACGACUACUUCGUg -3' miRNA: 3'- -GACGGCGCGCCGAUGCUGAUGAAGCA- -5' |
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5129 | 5' | -56.1 | NC_001798.1 | + | 140916 | 0.7 | 0.685657 |
Target: 5'- -gGCUGUGCuGCgcgACGACaGCUUCGUg -3' miRNA: 3'- gaCGGCGCGcCGa--UGCUGaUGAAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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