miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 3' -57.2 NC_001798.1 + 132690 0.66 0.894041
Target:  5'- aCGCCGaCGCGgcgcaggcGCGGGGGUCGCGCa- -3'
miRNA:   3'- aGUGGUaGUGC--------UGCUCCUGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 102557 0.66 0.894041
Target:  5'- aCGCgGUCAgCGGCGGGuGGCgggGCGCGg -3'
miRNA:   3'- aGUGgUAGU-GCUGCUC-CUGg--CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 53647 0.66 0.894041
Target:  5'- aCGCCGcCGCGgugGCGGGG-UUGCGCGa -3'
miRNA:   3'- aGUGGUaGUGC---UGCUCCuGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 81086 0.66 0.894041
Target:  5'- cUACCGcgggggacguucUCGCGGCGAGcGccGCCGaCGCGg -3'
miRNA:   3'- aGUGGU------------AGUGCUGCUC-C--UGGC-GCGCa -5'
5130 3' -57.2 NC_001798.1 + 89134 0.66 0.893389
Target:  5'- cCGCCuccaggugCGCGACGGccucGGGCCGCagggagaGCGUa -3'
miRNA:   3'- aGUGGua------GUGCUGCU----CCUGGCG-------CGCA- -5'
5130 3' -57.2 NC_001798.1 + 122824 0.66 0.88743
Target:  5'- -gGCCAggGCGGuCGGGGGCgGCgGCGg -3'
miRNA:   3'- agUGGUagUGCU-GCUCCUGgCG-CGCa -5'
5130 3' -57.2 NC_001798.1 + 29427 0.66 0.88743
Target:  5'- cUC-CCAUCugcguCGGCGGGGGgCgGCGCa- -3'
miRNA:   3'- -AGuGGUAGu----GCUGCUCCU-GgCGCGca -5'
5130 3' -57.2 NC_001798.1 + 153014 0.66 0.88743
Target:  5'- gUCGCCGggGCGGaguccGGGcCCGCGCGg -3'
miRNA:   3'- -AGUGGUagUGCUgc---UCCuGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 141155 0.66 0.88743
Target:  5'- aCACCA--GCGACcgcucuccgGGGGAgCGUGCGUu -3'
miRNA:   3'- aGUGGUagUGCUG---------CUCCUgGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 60236 0.66 0.886757
Target:  5'- gCGCCcuccUCGCgggcggcaaagguGACGcAGGugCGCGCGUu -3'
miRNA:   3'- aGUGGu---AGUG-------------CUGC-UCCugGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 104422 0.66 0.880602
Target:  5'- cCGCCGaagCACGGCcAGGGCCGUaaugguguugGCGg -3'
miRNA:   3'- aGUGGUa--GUGCUGcUCCUGGCG----------CGCa -5'
5130 3' -57.2 NC_001798.1 + 17964 0.66 0.880602
Target:  5'- uUCGCagGUCcggacguCGGgGGGGGCUGCGCGg -3'
miRNA:   3'- -AGUGg-UAGu------GCUgCUCCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 30727 0.66 0.880602
Target:  5'- gCACCAUCccgauagugaACGACccccGGACC-CGCGUg -3'
miRNA:   3'- aGUGGUAG----------UGCUGcu--CCUGGcGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 86589 0.66 0.880602
Target:  5'- -gACCAUCGCGACGA--GCUGCaGCu- -3'
miRNA:   3'- agUGGUAGUGCUGCUccUGGCG-CGca -5'
5130 3' -57.2 NC_001798.1 + 94553 0.66 0.880602
Target:  5'- gCGCCAaCGCGucCGAGGccGCCaagGCGCGg -3'
miRNA:   3'- aGUGGUaGUGCu-GCUCC--UGG---CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 97242 0.66 0.880602
Target:  5'- gCGCUGUUcggGCGGCGGGcggagcacuucGAUCGCGCGUu -3'
miRNA:   3'- aGUGGUAG---UGCUGCUC-----------CUGGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 104926 0.66 0.880602
Target:  5'- -aGCCGgccgCACGACugcagagacAGGACCaGCGCGg -3'
miRNA:   3'- agUGGUa---GUGCUGc--------UCCUGG-CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 58689 0.66 0.880602
Target:  5'- cCGCCGUCAgGGCcgcGGCgGCGCGg -3'
miRNA:   3'- aGUGGUAGUgCUGcucCUGgCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 117377 0.66 0.873561
Target:  5'- cCGCCGUCGCGGCcacGGGcACCGUccGCa- -3'
miRNA:   3'- aGUGGUAGUGCUGc--UCC-UGGCG--CGca -5'
5130 3' -57.2 NC_001798.1 + 144529 0.66 0.873561
Target:  5'- gCGCCGaccUCGCGuCGGGGAgacCCGC-CGUg -3'
miRNA:   3'- aGUGGU---AGUGCuGCUCCU---GGCGcGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.