miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 15533 0.65 0.628097
Target:  5'- gCGCUGcugguguucguguGCCCgGcCC-CGgGCGUUGCCg -3'
miRNA:   3'- -GCGAC-------------CGGGaCaGGcGCgCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 85596 0.66 0.619409
Target:  5'- uGUcGGCuCCU--UCGCGCGCuUCGCCc -3'
miRNA:   3'- gCGaCCG-GGAcaGGCGCGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 80906 0.66 0.619409
Target:  5'- aGCUcccGCgCCUGUCgGCGCuCaUCGCCg -3'
miRNA:   3'- gCGAc--CG-GGACAGgCGCGcGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 26093 0.66 0.619409
Target:  5'- cCGCggGGCCaacgugcgGUaCCGCGUGCGcacgCGCUu -3'
miRNA:   3'- -GCGa-CCGGga------CA-GGCGCGCGCa---GCGG- -5'
5131 5' -63.5 NC_001798.1 + 154172 0.66 0.619409
Target:  5'- gCGUaGGCCCggagCCGgaGCGCGUCGg- -3'
miRNA:   3'- -GCGaCCGGGaca-GGCg-CGCGCAGCgg -5'
5131 5' -63.5 NC_001798.1 + 79947 0.66 0.619409
Target:  5'- aGCUGGgCUgggcGUCCGgaGCGgCGgCGCCg -3'
miRNA:   3'- gCGACCgGGa---CAGGCg-CGC-GCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 65694 0.66 0.619409
Target:  5'- gCGC-GuGCUCUGUuuGuUGUGCGcCGCCa -3'
miRNA:   3'- -GCGaC-CGGGACAggC-GCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 47821 0.66 0.619409
Target:  5'- gGCUcucacGGCCCcGgccCCGCGCGCGcUCcuCCa -3'
miRNA:   3'- gCGA-----CCGGGaCa--GGCGCGCGC-AGc-GG- -5'
5131 5' -63.5 NC_001798.1 + 128291 0.66 0.619409
Target:  5'- -uCUGGCgCCUGacgcgCCGCGCcccccCGUcCGCCg -3'
miRNA:   3'- gcGACCG-GGACa----GGCGCGc----GCA-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 26563 0.66 0.619409
Target:  5'- gGCUGGCCacg-CCGCcgagGCGCGa-GCCc -3'
miRNA:   3'- gCGACCGGgacaGGCG----CGCGCagCGG- -5'
5131 5' -63.5 NC_001798.1 + 145723 0.66 0.609763
Target:  5'- aGCcccGGCCCcgGcCCGCGCccCGcCGCCa -3'
miRNA:   3'- gCGa--CCGGGa-CaGGCGCGc-GCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 106333 0.66 0.609763
Target:  5'- aGCUGcuucauGCCCgugGUCCGCuguuCGCGUUugcugGCCg -3'
miRNA:   3'- gCGAC------CGGGa--CAGGCGc---GCGCAG-----CGG- -5'
5131 5' -63.5 NC_001798.1 + 5725 0.66 0.609763
Target:  5'- gCGCUGgcGCCCUGcCCGgGgccCGCGUCaucCCg -3'
miRNA:   3'- -GCGAC--CGGGACaGGCgC---GCGCAGc--GG- -5'
5131 5' -63.5 NC_001798.1 + 26458 0.66 0.609763
Target:  5'- aCGCgGGCCCgcccCCGCagauacgcuGgGCGUCgGCCg -3'
miRNA:   3'- -GCGaCCGGGaca-GGCG---------CgCGCAG-CGG- -5'
5131 5' -63.5 NC_001798.1 + 8666 0.66 0.609763
Target:  5'- gGCgauaaccaGCCCgacgcaCCGCGUGCGcCGCCg -3'
miRNA:   3'- gCGac------CGGGaca---GGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 9189 0.66 0.609763
Target:  5'- gGCgGGUCC---CCGCGUGCGUcCGCg -3'
miRNA:   3'- gCGaCCGGGacaGGCGCGCGCA-GCGg -5'
5131 5' -63.5 NC_001798.1 + 113503 0.66 0.608799
Target:  5'- gCGC-GGCCCUGUgCGCccuggugGCG-GcCGCCc -3'
miRNA:   3'- -GCGaCCGGGACAgGCG-------CGCgCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 123455 0.66 0.606872
Target:  5'- gCGCgcccccgacccggGGCCCgaagccgaccucgUCGCGCGCaUCGCCa -3'
miRNA:   3'- -GCGa------------CCGGGaca----------GGCGCGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 5393 0.66 0.600132
Target:  5'- gGCggcGGCCCguugGU-CGCGC-CGcCGCCg -3'
miRNA:   3'- gCGa--CCGGGa---CAgGCGCGcGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 153022 0.66 0.600132
Target:  5'- gGCggaguccgGGCCCgcgcggCgGCGCGCGguuggccggCGCCg -3'
miRNA:   3'- gCGa-------CCGGGaca---GgCGCGCGCa--------GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.