miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 3' -59.7 NC_001798.1 + 142338 0.65 0.762739
Target:  5'- cGCUGgUgGGACGCCCAUauguaCGCGUaccccuuUGACu -3'
miRNA:   3'- uCGACgA-CCUGCGGGUG-----GCGUA-------GCUG- -5'
5132 3' -59.7 NC_001798.1 + 104908 0.65 0.762739
Target:  5'- uGGC-GCUGGcccacguACaGCCgGCCGCA-CGACu -3'
miRNA:   3'- -UCGaCGACC-------UG-CGGgUGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 2248 0.66 0.754293
Target:  5'- aGGCgGC-GGGCGCgCCGCCGgGgggcggggCGGCg -3'
miRNA:   3'- -UCGaCGaCCUGCG-GGUGGCgUa-------GCUG- -5'
5132 3' -59.7 NC_001798.1 + 134752 0.66 0.754293
Target:  5'- cGGC-GCUGGuCGCCCucuuCCgGCAgUGGCa -3'
miRNA:   3'- -UCGaCGACCuGCGGGu---GG-CGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 150931 0.66 0.754293
Target:  5'- gGGCggGCgGGACGUaguCCACUGCAgagggaGACa -3'
miRNA:   3'- -UCGa-CGaCCUGCG---GGUGGCGUag----CUG- -5'
5132 3' -59.7 NC_001798.1 + 3608 0.66 0.754293
Target:  5'- gAGCUGCUGu-UGCgCGCCGCGccCGAg -3'
miRNA:   3'- -UCGACGACcuGCGgGUGGCGUa-GCUg -5'
5132 3' -59.7 NC_001798.1 + 66943 0.66 0.754293
Target:  5'- gGGCUGCacGGAguCGUCCgACCGCgaGUCGGa -3'
miRNA:   3'- -UCGACGa-CCU--GCGGG-UGGCG--UAGCUg -5'
5132 3' -59.7 NC_001798.1 + 56530 0.66 0.753349
Target:  5'- uGGCggUGCcgGGGCGCCCGCacgaugucugggaCGCGaCGGCc -3'
miRNA:   3'- -UCG--ACGa-CCUGCGGGUG-------------GCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 8942 0.66 0.744811
Target:  5'- gAGCUGCggcggGGugG-CCGCCGgAccuuuaugcgccUCGGCg -3'
miRNA:   3'- -UCGACGa----CCugCgGGUGGCgU------------AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 23727 0.66 0.744811
Target:  5'- cGGCgggucgaGCUGGACGCCgaCGCgGCcucCGGCg -3'
miRNA:   3'- -UCGa------CGACCUGCGG--GUGgCGua-GCUG- -5'
5132 3' -59.7 NC_001798.1 + 37486 0.66 0.744811
Target:  5'- gAGCUGUaccGGGCccaacgcgcgGCCCGCUguGCGUCGAg -3'
miRNA:   3'- -UCGACGa--CCUG----------CGGGUGG--CGUAGCUg -5'
5132 3' -59.7 NC_001798.1 + 48361 0.66 0.744811
Target:  5'- cGGCcGCccgGGGcCGCCCcgcggggcguGCCGCcgCGACc -3'
miRNA:   3'- -UCGaCGa--CCU-GCGGG----------UGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 117915 0.66 0.744811
Target:  5'- cGCUGcCUGGAgCGUCuCAUCGUggaaacgggAUCGGCg -3'
miRNA:   3'- uCGAC-GACCU-GCGG-GUGGCG---------UAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 75373 0.66 0.744811
Target:  5'- gGGCUGUUGGA-GCUCugCGuCAUCu-- -3'
miRNA:   3'- -UCGACGACCUgCGGGugGC-GUAGcug -5'
5132 3' -59.7 NC_001798.1 + 147056 0.66 0.744811
Target:  5'- cGGCcGgaGGG-GCCC-CCGCAccUCGGCg -3'
miRNA:   3'- -UCGaCgaCCUgCGGGuGGCGU--AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 44221 0.66 0.744811
Target:  5'- cGCUGCcccagGGacauGCGCCCGacgaccgagCGCAUCGAUu -3'
miRNA:   3'- uCGACGa----CC----UGCGGGUg--------GCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 81991 0.66 0.742902
Target:  5'- aAGgaGCggucguccccggGGGCGaCCGCCGCcgCGGCc -3'
miRNA:   3'- -UCgaCGa-----------CCUGCgGGUGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 75479 0.66 0.741947
Target:  5'- cGGCccUGCUGGACuucaCCCugCGCAUgcugccccgcaaaaCGGCc -3'
miRNA:   3'- -UCG--ACGACCUGc---GGGugGCGUA--------------GCUG- -5'
5132 3' -59.7 NC_001798.1 + 131055 0.66 0.735232
Target:  5'- uAGC-GCgaGGucaccGCGCCCACCGCggCGuACa -3'
miRNA:   3'- -UCGaCGa-CC-----UGCGGGUGGCGuaGC-UG- -5'
5132 3' -59.7 NC_001798.1 + 26481 0.66 0.735232
Target:  5'- ---cGCUGGGCGUCgGCCGCGggcCGcGCg -3'
miRNA:   3'- ucgaCGACCUGCGGgUGGCGUa--GC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.