miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 3' -59.7 NC_001798.1 + 119014 0.67 0.696141
Target:  5'- cGCgGCUGGuCGCCCGggGCAUCcggGACc -3'
miRNA:   3'- uCGaCGACCuGCGGGUggCGUAG---CUG- -5'
5132 3' -59.7 NC_001798.1 + 2441 0.67 0.685223
Target:  5'- cGGCgGCUGGcgGCGCCaGCCGCccugcggGUCGGg -3'
miRNA:   3'- -UCGaCGACC--UGCGGgUGGCG-------UAGCUg -5'
5132 3' -59.7 NC_001798.1 + 32568 0.67 0.676251
Target:  5'- uGCUGC-GGGCcgcgGCCC-CCGCGUgGAg -3'
miRNA:   3'- uCGACGaCCUG----CGGGuGGCGUAgCUg -5'
5132 3' -59.7 NC_001798.1 + 80794 0.67 0.676251
Target:  5'- cGGCggGCcGGACGCCgCcCUGCG-CGACg -3'
miRNA:   3'- -UCGa-CGaCCUGCGG-GuGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 102365 0.67 0.676251
Target:  5'- cGGCcGCcGGAaGCCCAcCCGCcuggcgGUCGGCg -3'
miRNA:   3'- -UCGaCGaCCUgCGGGU-GGCG------UAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 127132 0.67 0.676251
Target:  5'- gGGUUug-GGAUGCCCGCCGCccUGACc -3'
miRNA:   3'- -UCGAcgaCCUGCGGGUGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 49403 0.67 0.665247
Target:  5'- gAGCUGC-GGGCGCgggaggagagcuaCCggACCGUGUUGGCa -3'
miRNA:   3'- -UCGACGaCCUGCG-------------GG--UGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 151750 0.67 0.65622
Target:  5'- cGCUGCUGG-CGagCCACUGCAugUCGu- -3'
miRNA:   3'- uCGACGACCuGCg-GGUGGCGU--AGCug -5'
5132 3' -59.7 NC_001798.1 + 138144 0.67 0.65622
Target:  5'- aAGCUGCUGcGgucGCGCCC-CCGgGUCcugggGGCg -3'
miRNA:   3'- -UCGACGAC-C---UGCGGGuGGCgUAG-----CUG- -5'
5132 3' -59.7 NC_001798.1 + 87164 0.67 0.65622
Target:  5'- gGGCUGCUGccccGCGUgCAgCGCGggCGACg -3'
miRNA:   3'- -UCGACGACc---UGCGgGUgGCGUa-GCUG- -5'
5132 3' -59.7 NC_001798.1 + 70432 0.67 0.65622
Target:  5'- gGGCUGCUGG-UGCaCCGCaugGCggUGGCg -3'
miRNA:   3'- -UCGACGACCuGCG-GGUGg--CGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 88092 0.67 0.65622
Target:  5'- uAGCUcGCggaGGGCGgCCAgCCGCG-CGACc -3'
miRNA:   3'- -UCGA-CGa--CCUGCgGGU-GGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 135316 0.68 0.646173
Target:  5'- gGGCcgUGCUGGAgCGCCUgguGCCggacGCGUgCGACg -3'
miRNA:   3'- -UCG--ACGACCU-GCGGG---UGG----CGUA-GCUG- -5'
5132 3' -59.7 NC_001798.1 + 126852 0.68 0.646173
Target:  5'- cGGCcaGCUGG-CGuCCCugCGCG-CGACc -3'
miRNA:   3'- -UCGa-CGACCuGC-GGGugGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 141469 0.68 0.636115
Target:  5'- gAGCUGCU-GACcgGCUCGCCGCG-CGGg -3'
miRNA:   3'- -UCGACGAcCUG--CGGGUGGCGUaGCUg -5'
5132 3' -59.7 NC_001798.1 + 28107 0.68 0.636115
Target:  5'- uGGCUGCUGG-UGCCC-CagGCGgaCGACa -3'
miRNA:   3'- -UCGACGACCuGCGGGuGg-CGUa-GCUG- -5'
5132 3' -59.7 NC_001798.1 + 32244 0.68 0.626054
Target:  5'- gGGCUGgUGGgaGCGUCgCGuCCGCGUcCGGCg -3'
miRNA:   3'- -UCGACgACC--UGCGG-GU-GGCGUA-GCUG- -5'
5132 3' -59.7 NC_001798.1 + 15534 0.68 0.617003
Target:  5'- cGCUGCUGGuguucgugugcccgGCCCcgggcguugccGCCGCcgCGGCg -3'
miRNA:   3'- uCGACGACCug------------CGGG-----------UGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 20774 0.68 0.615998
Target:  5'- gGGgaGCgacGGCGCCCGCCGCGUaGGu -3'
miRNA:   3'- -UCgaCGac-CUGCGGGUGGCGUAgCUg -5'
5132 3' -59.7 NC_001798.1 + 75179 0.68 0.605953
Target:  5'- uGCUcgagacGCUGGGgGCCCGCCGCccccCGGa -3'
miRNA:   3'- uCGA------CGACCUgCGGGUGGCGua--GCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.