Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 36574 | 0.66 | 0.904623 |
Target: 5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3' miRNA: 3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 133676 | 1.08 | 0.003384 |
Target: 5'- cCUGCCGGACGCACAGACAGCUGUACGc -3' miRNA: 3'- -GACGGCCUGCGUGUCUGUCGACAUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 31337 | 0.67 | 0.884866 |
Target: 5'- -gGCCGGcggggggcGCGCGCAGGCgcGGCggGUggGCGa -3' miRNA: 3'- gaCGGCC--------UGCGUGUCUG--UCGa-CA--UGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 48170 | 0.66 | 0.891681 |
Target: 5'- cCUGgCGGccACGCACGccCGGCUGgcgGCGg -3' miRNA: 3'- -GACgGCC--UGCGUGUcuGUCGACa--UGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 91262 | 0.66 | 0.891681 |
Target: 5'- uCUGCCGG-CgGCA-AGGCGGCgGUGCc -3' miRNA: 3'- -GACGGCCuG-CGUgUCUGUCGaCAUGc -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 12673 | 0.66 | 0.896316 |
Target: 5'- aCUGCCGGccaGCGCGCcgaugaucaggcccGGGuuGCUGgggGCGg -3' miRNA: 3'- -GACGGCC---UGCGUG--------------UCUguCGACa--UGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 143813 | 0.66 | 0.898268 |
Target: 5'- -gGcCCGGgcgGCGCGCGGcCAGCcGUugGa -3' miRNA: 3'- gaC-GGCC---UGCGUGUCuGUCGaCAugC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 60224 | 0.66 | 0.902109 |
Target: 5'- gUGCUGGACGacgcgcccuccuCGCGGGCGGCaaaggugacgcagGUGCGc -3' miRNA: 3'- gACGGCCUGC------------GUGUCUGUCGa------------CAUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 12858 | 0.66 | 0.904623 |
Target: 5'- -cGuuGGugGUGuCGGACAGCUccgGCGg -3' miRNA: 3'- gaCggCCugCGU-GUCUGUCGAca-UGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 36414 | 0.66 | 0.904623 |
Target: 5'- cCUGCCGGGCG---GGGCGGUgggGCGg -3' miRNA: 3'- -GACGGCCUGCgugUCUGUCGacaUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 36532 | 0.66 | 0.904623 |
Target: 5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3' miRNA: 3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 4360 | 0.66 | 0.922275 |
Target: 5'- -cGCCGGcgggggGCGCGCcGGCGGCgGUGg- -3' miRNA: 3'- gaCGGCC------UGCGUGuCUGUCGaCAUgc -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 36616 | 0.66 | 0.904623 |
Target: 5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3' miRNA: 3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 25578 | 0.66 | 0.910744 |
Target: 5'- gCUGCCGGGCGaggaccuggcCGCGGGCcGCgccgGggGCGg -3' miRNA: 3'- -GACGGCCUGC----------GUGUCUGuCGa---Ca-UGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 52181 | 0.66 | 0.910744 |
Target: 5'- uUGCgGGGCGCGuccUGGACGuGCUG-GCGg -3' miRNA: 3'- gACGgCCUGCGU---GUCUGU-CGACaUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 55712 | 0.66 | 0.910744 |
Target: 5'- -cGCCuGGACGCGuguCAGAgCGGCcagGUGCu -3' miRNA: 3'- gaCGG-CCUGCGU---GUCU-GUCGa--CAUGc -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 1752 | 0.66 | 0.916629 |
Target: 5'- -cGCCGGccaGCGCACGGcGCA-CUGcACGg -3' miRNA: 3'- gaCGGCC---UGCGUGUC-UGUcGACaUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 16848 | 0.66 | 0.916629 |
Target: 5'- gUGCauGACGC-CGGGCGGCaagGUGCc -3' miRNA: 3'- gACGgcCUGCGuGUCUGUCGa--CAUGc -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 14353 | 0.66 | 0.916629 |
Target: 5'- uUGUauCGGACGCGgGGcCGGUggGUGCGg -3' miRNA: 3'- gACG--GCCUGCGUgUCuGUCGa-CAUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 116316 | 0.66 | 0.921721 |
Target: 5'- aCUGCCGGAUugacgcggggggGCACGagcccgucuacgcGGCGGC-GUGCa -3' miRNA: 3'- -GACGGCCUG------------CGUGU-------------CUGUCGaCAUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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