miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 124126 0.66 0.785944
Target:  5'- -cGCGCUgUgGCGCGCCcCcGCCGUGg -3'
miRNA:   3'- gaUGUGGgGgCGCGUGGaGcUGGCAC- -5'
5133 3' -60 NC_001798.1 + 93504 0.66 0.785944
Target:  5'- -gGCGCCCCacgGCGCcCCUCG-UCGg- -3'
miRNA:   3'- gaUGUGGGGg--CGCGuGGAGCuGGCac -5'
5133 3' -60 NC_001798.1 + 116868 0.66 0.785944
Target:  5'- gCUGCucaugGCCCCC-CaGCACCUgGACCa-- -3'
miRNA:   3'- -GAUG-----UGGGGGcG-CGUGGAgCUGGcac -5'
5133 3' -60 NC_001798.1 + 29012 0.66 0.785056
Target:  5'- -cGCGCCgCCGCGCgggcccggacuccGCCccggCGACCGc- -3'
miRNA:   3'- gaUGUGGgGGCGCG-------------UGGa---GCUGGCac -5'
5133 3' -60 NC_001798.1 + 79412 0.66 0.783277
Target:  5'- -cGCGCCCCugcucguugaucuuCGCGC-CCUCGACg--- -3'
miRNA:   3'- gaUGUGGGG--------------GCGCGuGGAGCUGgcac -5'
5133 3' -60 NC_001798.1 + 32807 0.66 0.777011
Target:  5'- -gACGCCCCCGCGgGCCaCGGggaGUa -3'
miRNA:   3'- gaUGUGGGGGCGCgUGGaGCUgg-CAc -5'
5133 3' -60 NC_001798.1 + 18596 0.66 0.777011
Target:  5'- -aGCAgCCCCCccggguccGCGCGCCguccCG-CCGUGc -3'
miRNA:   3'- gaUGU-GGGGG--------CGCGUGGa---GCuGGCAC- -5'
5133 3' -60 NC_001798.1 + 23659 0.66 0.777011
Target:  5'- -aGCGCCgCCGgGC-CCgcgCGGCgGUGg -3'
miRNA:   3'- gaUGUGGgGGCgCGuGGa--GCUGgCAC- -5'
5133 3' -60 NC_001798.1 + 153427 0.66 0.777011
Target:  5'- -aGgACCCCCGuCGgGCCaggcgcgCGGCCGUc -3'
miRNA:   3'- gaUgUGGGGGC-GCgUGGa------GCUGGCAc -5'
5133 3' -60 NC_001798.1 + 95108 0.66 0.776111
Target:  5'- gCUGCgGCCCgugauggCCGCGCGCC-CGAuggUCGUGc -3'
miRNA:   3'- -GAUG-UGGG-------GGCGCGUGGaGCU---GGCAC- -5'
5133 3' -60 NC_001798.1 + 54484 0.66 0.767957
Target:  5'- ---gACCCCCGCgGCcCCUCGGagGUGc -3'
miRNA:   3'- gaugUGGGGGCG-CGuGGAGCUggCAC- -5'
5133 3' -60 NC_001798.1 + 57589 0.66 0.767957
Target:  5'- -cGCGuuCCCCCGCGgGCCcaccguuaUCGugCGUc -3'
miRNA:   3'- gaUGU--GGGGGCGCgUGG--------AGCugGCAc -5'
5133 3' -60 NC_001798.1 + 86576 0.66 0.767957
Target:  5'- --cCACCCCCGCGCcgACCaucgCGACg--- -3'
miRNA:   3'- gauGUGGGGGCGCG--UGGa---GCUGgcac -5'
5133 3' -60 NC_001798.1 + 107221 0.66 0.767957
Target:  5'- -cAUGCCCCCGacCGCGCC-CGGCaCGa- -3'
miRNA:   3'- gaUGUGGGGGC--GCGUGGaGCUG-GCac -5'
5133 3' -60 NC_001798.1 + 109686 0.66 0.767957
Target:  5'- -gGCGCCguuCCUggcggGCGCGcCCUCGGCCGa- -3'
miRNA:   3'- gaUGUGG---GGG-----CGCGU-GGAGCUGGCac -5'
5133 3' -60 NC_001798.1 + 126455 0.66 0.767957
Target:  5'- --cCGCCCCUGCGCAgguCCgagaCGGCCaUGa -3'
miRNA:   3'- gauGUGGGGGCGCGU---GGa---GCUGGcAC- -5'
5133 3' -60 NC_001798.1 + 167 0.66 0.767957
Target:  5'- ----cCCCCCGCGCGCCgcggGGCUGc- -3'
miRNA:   3'- gauguGGGGGCGCGUGGag--CUGGCac -5'
5133 3' -60 NC_001798.1 + 154505 0.66 0.767957
Target:  5'- ----cCCCCCGCGCGCCgcggGGCUGc- -3'
miRNA:   3'- gauguGGGGGCGCGUGGag--CUGGCac -5'
5133 3' -60 NC_001798.1 + 46386 0.66 0.75879
Target:  5'- -aGCGauCCCCCGCGC-CgUCuGGCCGg- -3'
miRNA:   3'- gaUGU--GGGGGCGCGuGgAG-CUGGCac -5'
5133 3' -60 NC_001798.1 + 2618 0.66 0.75879
Target:  5'- -gGCGCCgCCCgGCgGCGCCcUGGCCGg- -3'
miRNA:   3'- gaUGUGG-GGG-CG-CGUGGaGCUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.