Results 1 - 20 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5133 | 3' | -60 | NC_001798.1 | + | 93504 | 0.66 | 0.785944 |
Target: 5'- -gGCGCCCCacgGCGCcCCUCG-UCGg- -3' miRNA: 3'- gaUGUGGGGg--CGCGuGGAGCuGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 116868 | 0.66 | 0.785944 |
Target: 5'- gCUGCucaugGCCCCC-CaGCACCUgGACCa-- -3' miRNA: 3'- -GAUG-----UGGGGGcG-CGUGGAgCUGGcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 124126 | 0.66 | 0.785944 |
Target: 5'- -cGCGCUgUgGCGCGCCcCcGCCGUGg -3' miRNA: 3'- gaUGUGGgGgCGCGUGGaGcUGGCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 29012 | 0.66 | 0.785056 |
Target: 5'- -cGCGCCgCCGCGCgggcccggacuccGCCccggCGACCGc- -3' miRNA: 3'- gaUGUGGgGGCGCG-------------UGGa---GCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 79412 | 0.66 | 0.783277 |
Target: 5'- -cGCGCCCCugcucguugaucuuCGCGC-CCUCGACg--- -3' miRNA: 3'- gaUGUGGGG--------------GCGCGuGGAGCUGgcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 153427 | 0.66 | 0.777011 |
Target: 5'- -aGgACCCCCGuCGgGCCaggcgcgCGGCCGUc -3' miRNA: 3'- gaUgUGGGGGC-GCgUGGa------GCUGGCAc -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 23659 | 0.66 | 0.777011 |
Target: 5'- -aGCGCCgCCGgGC-CCgcgCGGCgGUGg -3' miRNA: 3'- gaUGUGGgGGCgCGuGGa--GCUGgCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 18596 | 0.66 | 0.777011 |
Target: 5'- -aGCAgCCCCCccggguccGCGCGCCguccCG-CCGUGc -3' miRNA: 3'- gaUGU-GGGGG--------CGCGUGGa---GCuGGCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 32807 | 0.66 | 0.777011 |
Target: 5'- -gACGCCCCCGCGgGCCaCGGggaGUa -3' miRNA: 3'- gaUGUGGGGGCGCgUGGaGCUgg-CAc -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 95108 | 0.66 | 0.776111 |
Target: 5'- gCUGCgGCCCgugauggCCGCGCGCC-CGAuggUCGUGc -3' miRNA: 3'- -GAUG-UGGG-------GGCGCGUGGaGCU---GGCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 154505 | 0.66 | 0.767957 |
Target: 5'- ----cCCCCCGCGCGCCgcggGGCUGc- -3' miRNA: 3'- gauguGGGGGCGCGUGGag--CUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 54484 | 0.66 | 0.767957 |
Target: 5'- ---gACCCCCGCgGCcCCUCGGagGUGc -3' miRNA: 3'- gaugUGGGGGCG-CGuGGAGCUggCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 57589 | 0.66 | 0.767957 |
Target: 5'- -cGCGuuCCCCCGCGgGCCcaccguuaUCGugCGUc -3' miRNA: 3'- gaUGU--GGGGGCGCgUGG--------AGCugGCAc -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 86576 | 0.66 | 0.767957 |
Target: 5'- --cCACCCCCGCGCcgACCaucgCGACg--- -3' miRNA: 3'- gauGUGGGGGCGCG--UGGa---GCUGgcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 107221 | 0.66 | 0.767957 |
Target: 5'- -cAUGCCCCCGacCGCGCC-CGGCaCGa- -3' miRNA: 3'- gaUGUGGGGGC--GCGUGGaGCUG-GCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 109686 | 0.66 | 0.767957 |
Target: 5'- -gGCGCCguuCCUggcggGCGCGcCCUCGGCCGa- -3' miRNA: 3'- gaUGUGG---GGG-----CGCGU-GGAGCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 126455 | 0.66 | 0.767957 |
Target: 5'- --cCGCCCCUGCGCAgguCCgagaCGGCCaUGa -3' miRNA: 3'- gauGUGGGGGCGCGU---GGa---GCUGGcAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 167 | 0.66 | 0.767957 |
Target: 5'- ----cCCCCCGCGCGCCgcggGGCUGc- -3' miRNA: 3'- gauguGGGGGCGCGUGGag--CUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 77947 | 0.66 | 0.75879 |
Target: 5'- aUGCucCCCCCGCucGCcgccauccaccGCCUCGGCUGg- -3' miRNA: 3'- gAUGu-GGGGGCG--CG-----------UGGAGCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 46386 | 0.66 | 0.75879 |
Target: 5'- -aGCGauCCCCCGCGC-CgUCuGGCCGg- -3' miRNA: 3'- gaUGU--GGGGGCGCGuGgAG-CUGGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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