Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5133 | 5' | -55.4 | NC_001798.1 | + | 26980 | 0.66 | 0.925241 |
Target: 5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3' miRNA: 3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 26950 | 0.66 | 0.925241 |
Target: 5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3' miRNA: 3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 26906 | 0.66 | 0.925241 |
Target: 5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3' miRNA: 3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 26876 | 0.66 | 0.925241 |
Target: 5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3' miRNA: 3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 26846 | 0.66 | 0.925241 |
Target: 5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3' miRNA: 3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 26816 | 0.66 | 0.925241 |
Target: 5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3' miRNA: 3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 27010 | 0.66 | 0.925241 |
Target: 5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3' miRNA: 3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 150451 | 0.66 | 0.919664 |
Target: 5'- aCGCGcGGGGcgacGGccgCGCGGGGGCGc--- -3' miRNA: 3'- -GCGUaUUCU----CCa--GCGCCCCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 14316 | 0.66 | 0.913843 |
Target: 5'- --aGUGGGGGGUgCGUGGGGagGCGUGc- -3' miRNA: 3'- gcgUAUUCUCCA-GCGCCCC--CGCAUuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 150850 | 0.66 | 0.913843 |
Target: 5'- gCGCcgGucGGGUCGCGGcGGGCu---- -3' miRNA: 3'- -GCGuaUucUCCAGCGCC-CCCGcauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 56170 | 0.66 | 0.913843 |
Target: 5'- aCGCcc-GGGGGaCgGCGGGGGgGUGGGg -3' miRNA: 3'- -GCGuauUCUCCaG-CGCCCCCgCAUUU- -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 146278 | 0.66 | 0.907779 |
Target: 5'- cCGCAgccgGAGAGGccgaGCGGGGaGUGg--- -3' miRNA: 3'- -GCGUa---UUCUCCag--CGCCCC-CGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 151819 | 0.66 | 0.906538 |
Target: 5'- aGCAacGGGGGggauuuagaggGCGcGGGGCGUGAGg -3' miRNA: 3'- gCGUauUCUCCag---------CGC-CCCCGCAUUU- -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 28772 | 0.66 | 0.901475 |
Target: 5'- cCGCGgaggAGGAGGagGCGGcGGCGg--- -3' miRNA: 3'- -GCGUa---UUCUCCagCGCCcCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 8554 | 0.66 | 0.894933 |
Target: 5'- uCGCGgc-GAGGg-GUGGGGGCGa--- -3' miRNA: 3'- -GCGUauuCUCCagCGCCCCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 151605 | 0.66 | 0.894933 |
Target: 5'- gCGCucggccGGGGGcCGggcCGGGGGCGUGGc -3' miRNA: 3'- -GCGuau---UCUCCaGC---GCCCCCGCAUUu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 31147 | 0.66 | 0.894933 |
Target: 5'- gGCGcGGGGGcGgcggUGCGGGGGCGa--- -3' miRNA: 3'- gCGUaUUCUC-Ca---GCGCCCCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 2997 | 0.67 | 0.888155 |
Target: 5'- cCGCGggccccGGG-CGCGGGGGCGc--- -3' miRNA: 3'- -GCGUauuc--UCCaGCGCCCCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 17230 | 0.67 | 0.888155 |
Target: 5'- cCGCcuUucGGGGUCGCGcGGGGCc---- -3' miRNA: 3'- -GCGu-AuuCUCCAGCGC-CCCCGcauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 20608 | 0.67 | 0.888155 |
Target: 5'- uCGCAgguUGAuucGGGGUCGCuuggauuugcggGGGGGUGUGu- -3' miRNA: 3'- -GCGU---AUU---CUCCAGCG------------CCCCCGCAUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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