miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5135 5' -55.9 NC_001798.1 + 2065 0.66 0.941158
Target:  5'- aGGACagcccgccGCGCUCgGCGgaccacuccgGGGGGGgc-CCg -3'
miRNA:   3'- cCCUG--------UGCGAG-CGCa---------UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 97518 0.66 0.921051
Target:  5'- cGGGC-CGC-CGCGgaggAGGGGGg---- -3'
miRNA:   3'- cCCUGuGCGaGCGCa---UCCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 97475 0.66 0.921051
Target:  5'- gGGGGCcgGCGg-CGCGaccGGGGGGg--CCg -3'
miRNA:   3'- -CCCUG--UGCgaGCGCa--UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 43524 0.66 0.921051
Target:  5'- aGGcGGCG-GC-CGCGUcucccgccAGGGcGGUUUCCc -3'
miRNA:   3'- -CC-CUGUgCGaGCGCA--------UCCC-CCAAAGG- -5'
5135 5' -55.9 NC_001798.1 + 136807 0.66 0.915446
Target:  5'- cGGACGCGCUCgaagggagacGCGUGGcGGG---CCa -3'
miRNA:   3'- cCCUGUGCGAG----------CGCAUCcCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 96431 0.66 0.915446
Target:  5'- uGGAgUACGCguggCGCG-AGGGGGagcggcUCCu -3'
miRNA:   3'- cCCU-GUGCGa---GCGCaUCCCCCaa----AGG- -5'
5135 5' -55.9 NC_001798.1 + 57522 0.66 0.915446
Target:  5'- gGGGGgGCGUggGUGUgguucGGGGGGcggaugcgUUCCg -3'
miRNA:   3'- -CCCUgUGCGagCGCA-----UCCCCCa-------AAGG- -5'
5135 5' -55.9 NC_001798.1 + 30184 0.66 0.915446
Target:  5'- gGGGACACGg-CGC---GGGGGUcccgCCu -3'
miRNA:   3'- -CCCUGUGCgaGCGcauCCCCCAaa--GG- -5'
5135 5' -55.9 NC_001798.1 + 3007 0.66 0.915446
Target:  5'- cGGGCGCGggggCGCGgcGGGccGGgcUCCg -3'
miRNA:   3'- cCCUGUGCga--GCGCauCCC--CCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 92036 0.66 0.926425
Target:  5'- aGGGGC-CGCUCgGCGaacGGGcGGGUguagaccCCa -3'
miRNA:   3'- -CCCUGuGCGAG-CGCa--UCC-CCCAaa-----GG- -5'
5135 5' -55.9 NC_001798.1 + 88077 0.66 0.926425
Target:  5'- uGGGGCGgcggcgucuaGCUCGCGgAGGGcGGccagCCg -3'
miRNA:   3'- -CCCUGUg---------CGAGCGCaUCCC-CCaaa-GG- -5'
5135 5' -55.9 NC_001798.1 + 149400 0.66 0.941158
Target:  5'- cGGGGgGCG-UCGgGUAgucGGGGGg--CCu -3'
miRNA:   3'- -CCCUgUGCgAGCgCAU---CCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 41129 0.66 0.941158
Target:  5'- cGGGugAUuuUCGUGUAGGGGuaUUgCa -3'
miRNA:   3'- -CCCugUGcgAGCGCAUCCCCcaAAgG- -5'
5135 5' -55.9 NC_001798.1 + 9719 0.66 0.941158
Target:  5'- cGGGcuCGgGCUgGCGcUGGGGGaGgugcugUUCCa -3'
miRNA:   3'- -CCCu-GUgCGAgCGC-AUCCCC-Ca-----AAGG- -5'
5135 5' -55.9 NC_001798.1 + 133732 0.66 0.938378
Target:  5'- gGGGcgcgcgcuucaagcuGCGCGCgccCGCGUGGGGGcg--CUg -3'
miRNA:   3'- -CCC---------------UGUGCGa--GCGCAUCCCCcaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 94394 0.66 0.936478
Target:  5'- cGGuCGCGCUCuCGgAGGGGGcggCUa -3'
miRNA:   3'- cCCuGUGCGAGcGCaUCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 34816 0.66 0.936478
Target:  5'- cGGGGCccccGCGCUC-CGccGGGGGcccgggCCg -3'
miRNA:   3'- -CCCUG----UGCGAGcGCauCCCCCaaa---GG- -5'
5135 5' -55.9 NC_001798.1 + 122113 0.66 0.936478
Target:  5'- cGGGGgGCGCuUUGCcagccGGGGGGg--CCc -3'
miRNA:   3'- -CCCUgUGCG-AGCGca---UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 6365 0.66 0.931567
Target:  5'- gGGGACGgGC-CGgGgggccGGGGGg--CCg -3'
miRNA:   3'- -CCCUGUgCGaGCgCau---CCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 16203 0.67 0.90961
Target:  5'- cGGGccgcccuccgcACGCGC-CGCcuGUGGGGGGgcgguggggCCg -3'
miRNA:   3'- -CCC-----------UGUGCGaGCG--CAUCCCCCaaa------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.