Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5135 | 5' | -55.9 | NC_001798.1 | + | 45930 | 0.67 | 0.89074 |
Target: 5'- gGGGugGCGgUCGCGUccGGaaccccucuGGGGUaggCCc -3' miRNA: 3'- -CCCugUGCgAGCGCA--UC---------CCCCAaa-GG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 34065 | 0.67 | 0.89074 |
Target: 5'- cGGGCACGCgccuUUGgGguuguugggGGGGGGUgaCCg -3' miRNA: 3'- cCCUGUGCG----AGCgCa--------UCCCCCAaaGG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 40826 | 0.67 | 0.884006 |
Target: 5'- gGGGGC-CGCUgguucCGCGUuuuuGGGGGccgagCCc -3' miRNA: 3'- -CCCUGuGCGA-----GCGCAu---CCCCCaaa--GG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 33406 | 0.67 | 0.882632 |
Target: 5'- aGGGCGCcugGCUCGgGgagggaggagggGGGGGGUcagCCg -3' miRNA: 3'- cCCUGUG---CGAGCgCa-----------UCCCCCAaa-GG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 147490 | 0.67 | 0.877054 |
Target: 5'- gGGGACccAgGCUC-CGggggGGGGGGgcgCCu -3' miRNA: 3'- -CCCUG--UgCGAGcGCa---UCCCCCaaaGG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 111627 | 0.67 | 0.877054 |
Target: 5'- gGGGGCGgcaGaCUCGCGUcGGGGGcgcUCg -3' miRNA: 3'- -CCCUGUg--C-GAGCGCAuCCCCCaa-AGg -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 85266 | 0.67 | 0.877054 |
Target: 5'- cGGGGC-CGCgCGCGaggcuucgGGGGGGcgggggCCg -3' miRNA: 3'- -CCCUGuGCGaGCGCa-------UCCCCCaaa---GG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 27181 | 0.67 | 0.877054 |
Target: 5'- cGGGGC-CGCggGCGcGGGGGGa---- -3' miRNA: 3'- -CCCUGuGCGagCGCaUCCCCCaaagg -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 61827 | 0.67 | 0.89074 |
Target: 5'- cGGGCACGCcuUCGCcccGGGGGa--CCg -3' miRNA: 3'- cCCUGUGCG--AGCGcauCCCCCaaaGG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 38931 | 0.67 | 0.897255 |
Target: 5'- aGGGGCGCaggCGCGUGGcGaGGuUUUCCa -3' miRNA: 3'- -CCCUGUGcgaGCGCAUC-C-CCcAAAGG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 29500 | 0.67 | 0.90961 |
Target: 5'- cGGGGC-CGCccCGagagGGGGGGaUUCCc -3' miRNA: 3'- -CCCUGuGCGa-GCgca-UCCCCCaAAGG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 16203 | 0.67 | 0.90961 |
Target: 5'- cGGGccgcccuccgcACGCGC-CGCcuGUGGGGGGgcgguggggCCg -3' miRNA: 3'- -CCC-----------UGUGCGaGCG--CAUCCCCCaaa------GG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 150809 | 0.67 | 0.909014 |
Target: 5'- cGGGGCGCcgccgcugcugcuGCUcCGCGgggcgccAGGGGGcg-CCg -3' miRNA: 3'- -CCCUGUG-------------CGA-GCGCa------UCCCCCaaaGG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 36561 | 0.67 | 0.907211 |
Target: 5'- gGGGGCGCGCg-GCGgccgGGcGGGGgcgcgcggcggCCg -3' miRNA: 3'- -CCCUGUGCGagCGCa---UC-CCCCaaa--------GG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 36519 | 0.67 | 0.907211 |
Target: 5'- gGGGGCGCGCg-GCGgccgGGcGGGGgcgcgcggcggCCg -3' miRNA: 3'- -CCCUGUGCGagCGCa---UC-CCCCaaa--------GG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 98541 | 0.67 | 0.903546 |
Target: 5'- gGGGGCuugauuugcGCGCUgGuCGUGGGGgcgcuGGUggCCg -3' miRNA: 3'- -CCCUG---------UGCGAgC-GCAUCCC-----CCAaaGG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 144545 | 0.67 | 0.897255 |
Target: 5'- gGGGAgAC-C-CGcCGUGGGGGGgcgUUCg -3' miRNA: 3'- -CCCUgUGcGaGC-GCAUCCCCCa--AAGg -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 27262 | 0.67 | 0.897255 |
Target: 5'- cGGGAC-CGCagccccguggCGCGcGGGGGGgaggggcugCCg -3' miRNA: 3'- -CCCUGuGCGa---------GCGCaUCCCCCaaa------GG- -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 5249 | 0.67 | 0.897255 |
Target: 5'- cGGGGCGCGCg-GgGcGGGGGGa---- -3' miRNA: 3'- -CCCUGUGCGagCgCaUCCCCCaaagg -5' |
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5135 | 5' | -55.9 | NC_001798.1 | + | 14171 | 0.68 | 0.869892 |
Target: 5'- uGGGGCAaauugGCcCGCGUGGGGGcagcaCCu -3' miRNA: 3'- -CCCUGUg----CGaGCGCAUCCCCcaaa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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