miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5135 5' -55.9 NC_001798.1 + 78939 0.69 0.787922
Target:  5'- uGGGACGaggucugggguCGCUuuggcCGCGUccGGGGGGgcgCCu -3'
miRNA:   3'- -CCCUGU-----------GCGA-----GCGCA--UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 38351 0.69 0.804782
Target:  5'- aGGGGCGuCGUugucaugUUGCGaGGGGGGggUCg -3'
miRNA:   3'- -CCCUGU-GCG-------AGCGCaUCCCCCaaAGg -5'
5135 5' -55.9 NC_001798.1 + 15496 0.69 0.822778
Target:  5'- gGGGGCugGUgUG-GUGGGGGGcgUUUUCg -3'
miRNA:   3'- -CCCUGugCGaGCgCAUCCCCC--AAAGG- -5'
5135 5' -55.9 NC_001798.1 + 106053 0.69 0.822778
Target:  5'- cGGGuCACGUgUCGgGgAGGGGGg--CCu -3'
miRNA:   3'- -CCCuGUGCG-AGCgCaUCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 153072 0.68 0.839229
Target:  5'- uGGGGCGgGCggaGCGgcGGGGcGgcgCCg -3'
miRNA:   3'- -CCCUGUgCGag-CGCauCCCC-CaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 41436 0.68 0.839229
Target:  5'- -aGACGCGg--GCGUGGGGGG--UCCa -3'
miRNA:   3'- ccCUGUGCgagCGCAUCCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 45860 0.68 0.847185
Target:  5'- -cGGCccccCGCUUGCuUGGGGGGgcgUCCg -3'
miRNA:   3'- ccCUGu---GCGAGCGcAUCCCCCaa-AGG- -5'
5135 5' -55.9 NC_001798.1 + 57746 0.68 0.854951
Target:  5'- uGGGCGCGCccggCGCagcgAGGaGGGUUgCCg -3'
miRNA:   3'- cCCUGUGCGa---GCGca--UCC-CCCAAaGG- -5'
5135 5' -55.9 NC_001798.1 + 95782 0.68 0.854951
Target:  5'- uGGAUAUGCUCuagggGCGgggguGGGGGggUCg -3'
miRNA:   3'- cCCUGUGCGAG-----CGCau---CCCCCaaAGg -5'
5135 5' -55.9 NC_001798.1 + 71685 0.68 0.854951
Target:  5'- cGGcGCACGCUCGU--GGGGGaGUUUg- -3'
miRNA:   3'- -CCcUGUGCGAGCGcaUCCCC-CAAAgg -5'
5135 5' -55.9 NC_001798.1 + 15199 0.68 0.862522
Target:  5'- gGGGGCugGCgaGCc-GGGGGGagcgUCCg -3'
miRNA:   3'- -CCCUGugCGagCGcaUCCCCCaa--AGG- -5'
5135 5' -55.9 NC_001798.1 + 144214 0.68 0.869164
Target:  5'- aGGAgGCGC--GCGguUAGGGGGUUcgcgagcUCCg -3'
miRNA:   3'- cCCUgUGCGagCGC--AUCCCCCAA-------AGG- -5'
5135 5' -55.9 NC_001798.1 + 14171 0.68 0.869892
Target:  5'- uGGGGCAaauugGCcCGCGUGGGGGcagcaCCu -3'
miRNA:   3'- -CCCUGUg----CGaGCGCAUCCCCcaaa-GG- -5'
5135 5' -55.9 NC_001798.1 + 150170 0.68 0.872782
Target:  5'- gGGGGCGggccgccgcccccucCGCg-GCGUGGGGGGcggcaCCg -3'
miRNA:   3'- -CCCUGU---------------GCGagCGCAUCCCCCaaa--GG- -5'
5135 5' -55.9 NC_001798.1 + 27181 0.67 0.877054
Target:  5'- cGGGGC-CGCggGCGcGGGGGGa---- -3'
miRNA:   3'- -CCCUGuGCGagCGCaUCCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 85266 0.67 0.877054
Target:  5'- cGGGGC-CGCgCGCGaggcuucgGGGGGGcgggggCCg -3'
miRNA:   3'- -CCCUGuGCGaGCGCa-------UCCCCCaaa---GG- -5'
5135 5' -55.9 NC_001798.1 + 111627 0.67 0.877054
Target:  5'- gGGGGCGgcaGaCUCGCGUcGGGGGcgcUCg -3'
miRNA:   3'- -CCCUGUg--C-GAGCGCAuCCCCCaa-AGg -5'
5135 5' -55.9 NC_001798.1 + 147490 0.67 0.877054
Target:  5'- gGGGACccAgGCUC-CGggggGGGGGGgcgCCu -3'
miRNA:   3'- -CCCUG--UgCGAGcGCa---UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 33406 0.67 0.882632
Target:  5'- aGGGCGCcugGCUCGgGgagggaggagggGGGGGGUcagCCg -3'
miRNA:   3'- cCCUGUG---CGAGCgCa-----------UCCCCCAaa-GG- -5'
5135 5' -55.9 NC_001798.1 + 40826 0.67 0.884006
Target:  5'- gGGGGC-CGCUgguucCGCGUuuuuGGGGGccgagCCc -3'
miRNA:   3'- -CCCUGuGCGA-----GCGCAu---CCCCCaaa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.