miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5135 5' -55.9 NC_001798.1 + 130207 1.14 0.001602
Target:  5'- uGGGACACGCUCGCGUAGGGGGUUUCCg -3'
miRNA:   3'- -CCCUGUGCGAGCGCAUCCCCCAAAGG- -5'
5135 5' -55.9 NC_001798.1 + 137450 0.81 0.24713
Target:  5'- gGGGACGCGCUCGCccggaaaucGgcGGGGGUUg-- -3'
miRNA:   3'- -CCCUGUGCGAGCG---------CauCCCCCAAagg -5'
5135 5' -55.9 NC_001798.1 + 102767 0.77 0.371699
Target:  5'- cGGGA-ACGCUCGCGgcGGGGGa---- -3'
miRNA:   3'- -CCCUgUGCGAGCGCauCCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 39421 0.75 0.503834
Target:  5'- cGGGGCGCgGCcgucCGCGUGcGGGGGggUCa -3'
miRNA:   3'- -CCCUGUG-CGa---GCGCAU-CCCCCaaAGg -5'
5135 5' -55.9 NC_001798.1 + 59667 0.74 0.523031
Target:  5'- gGGGGCGacucgGCUCGCGUGGGGGcGg---- -3'
miRNA:   3'- -CCCUGUg----CGAGCGCAUCCCC-Caaagg -5'
5135 5' -55.9 NC_001798.1 + 2564 0.73 0.582103
Target:  5'- aGGGGCG-GC-CGCGgggcGGGGGGcgUCCg -3'
miRNA:   3'- -CCCUGUgCGaGCGCa---UCCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 31345 0.73 0.582103
Target:  5'- gGGGGCGCGCgcaggCGCGgcGGGuGGgcgaagacgCCg -3'
miRNA:   3'- -CCCUGUGCGa----GCGCauCCC-CCaaa------GG- -5'
5135 5' -55.9 NC_001798.1 + 50562 0.73 0.592106
Target:  5'- gGGGuuACGCGCg-GgGUGGGGGGUgugugCCg -3'
miRNA:   3'- -CCC--UGUGCGagCgCAUCCCCCAaa---GG- -5'
5135 5' -55.9 NC_001798.1 + 15114 0.72 0.622256
Target:  5'- cGGugGCGCugUCGuCGUccucGGGGGGUUcgCCg -3'
miRNA:   3'- cCCugUGCG--AGC-GCA----UCCCCCAAa-GG- -5'
5135 5' -55.9 NC_001798.1 + 101810 0.72 0.626285
Target:  5'- cGGGCGCcucggguugggguaaGCUCGCGgcGGGGGgaggcgugggUCCc -3'
miRNA:   3'- cCCUGUG---------------CGAGCGCauCCCCCaa--------AGG- -5'
5135 5' -55.9 NC_001798.1 + 22340 0.72 0.63233
Target:  5'- cGGACGCGCggGCGUcGGGGcGGgg-CCg -3'
miRNA:   3'- cCCUGUGCGagCGCA-UCCC-CCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 39452 0.72 0.65247
Target:  5'- aGGGACAgCGCcaUCaGCGgAGGGGGgg-CCu -3'
miRNA:   3'- -CCCUGU-GCG--AG-CGCaUCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 85997 0.71 0.682542
Target:  5'- cGGG--GCGCUgGCGcaGGGGGGUgagCCg -3'
miRNA:   3'- -CCCugUGCGAgCGCa-UCCCCCAaa-GG- -5'
5135 5' -55.9 NC_001798.1 + 36624 0.71 0.702403
Target:  5'- gGGGGCGCGCg-GCGgccgggcGGGGGcgcgcUUUCCc -3'
miRNA:   3'- -CCCUGUGCGagCGCau-----CCCCC-----AAAGG- -5'
5135 5' -55.9 NC_001798.1 + 9660 0.71 0.712251
Target:  5'- cGGGccGCGCGCggagggCGCGggauGGGGGgcUCUc -3'
miRNA:   3'- -CCC--UGUGCGa-----GCGCau--CCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 117674 0.7 0.741365
Target:  5'- gGGGACGCGCggccggcggCGUGUAcgcGGGGGa---- -3'
miRNA:   3'- -CCCUGUGCGa--------GCGCAU---CCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 69522 0.7 0.741365
Target:  5'- cGGGGCGuggcccgcgaGCUCGCGcgggcUGGuGGuGGUUUCCa -3'
miRNA:   3'- -CCCUGUg---------CGAGCGC-----AUC-CC-CCAAAGG- -5'
5135 5' -55.9 NC_001798.1 + 150640 0.7 0.760327
Target:  5'- cGGGGC-UGuCUCGCG--GGGGGcgUCCu -3'
miRNA:   3'- -CCCUGuGC-GAGCGCauCCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 2964 0.7 0.769647
Target:  5'- cGGGGCGCGUcggcgUGCGgcGGGGcGg--CCg -3'
miRNA:   3'- -CCCUGUGCGa----GCGCauCCCC-CaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 101939 0.7 0.778848
Target:  5'- gGGGAUACGa--GgGUGGGGGGa--CCg -3'
miRNA:   3'- -CCCUGUGCgagCgCAUCCCCCaaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.