miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5135 5' -55.9 NC_001798.1 + 2065 0.66 0.941158
Target:  5'- aGGACagcccgccGCGCUCgGCGgaccacuccgGGGGGGgc-CCg -3'
miRNA:   3'- cCCUG--------UGCGAG-CGCa---------UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 2564 0.73 0.582103
Target:  5'- aGGGGCG-GC-CGCGgggcGGGGGGcgUCCg -3'
miRNA:   3'- -CCCUGUgCGaGCGCa---UCCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 2964 0.7 0.769647
Target:  5'- cGGGGCGCGUcggcgUGCGgcGGGGcGg--CCg -3'
miRNA:   3'- -CCCUGUGCGa----GCGCauCCCC-CaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 3007 0.66 0.915446
Target:  5'- cGGGCGCGggggCGCGgcGGGccGGgcUCCg -3'
miRNA:   3'- cCCUGUGCga--GCGCauCCC--CCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 5249 0.67 0.897255
Target:  5'- cGGGGCGCGCg-GgGcGGGGGGa---- -3'
miRNA:   3'- -CCCUGUGCGagCgCaUCCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 6365 0.66 0.931567
Target:  5'- gGGGACGgGC-CGgGgggccGGGGGg--CCg -3'
miRNA:   3'- -CCCUGUgCGaGCgCau---CCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 9660 0.71 0.712251
Target:  5'- cGGGccGCGCGCggagggCGCGggauGGGGGgcUCUc -3'
miRNA:   3'- -CCC--UGUGCGa-----GCGCau--CCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 9719 0.66 0.941158
Target:  5'- cGGGcuCGgGCUgGCGcUGGGGGaGgugcugUUCCa -3'
miRNA:   3'- -CCCu-GUgCGAgCGC-AUCCCC-Ca-----AAGG- -5'
5135 5' -55.9 NC_001798.1 + 14171 0.68 0.869892
Target:  5'- uGGGGCAaauugGCcCGCGUGGGGGcagcaCCu -3'
miRNA:   3'- -CCCUGUg----CGaGCGCAUCCCCcaaa-GG- -5'
5135 5' -55.9 NC_001798.1 + 15114 0.72 0.622256
Target:  5'- cGGugGCGCugUCGuCGUccucGGGGGGUUcgCCg -3'
miRNA:   3'- cCCugUGCG--AGC-GCA----UCCCCCAAa-GG- -5'
5135 5' -55.9 NC_001798.1 + 15199 0.68 0.862522
Target:  5'- gGGGGCugGCgaGCc-GGGGGGagcgUCCg -3'
miRNA:   3'- -CCCUGugCGagCGcaUCCCCCaa--AGG- -5'
5135 5' -55.9 NC_001798.1 + 15496 0.69 0.822778
Target:  5'- gGGGGCugGUgUG-GUGGGGGGcgUUUUCg -3'
miRNA:   3'- -CCCUGugCGaGCgCAUCCCCC--AAAGG- -5'
5135 5' -55.9 NC_001798.1 + 16203 0.67 0.90961
Target:  5'- cGGGccgcccuccgcACGCGC-CGCcuGUGGGGGGgcgguggggCCg -3'
miRNA:   3'- -CCC-----------UGUGCGaGCG--CAUCCCCCaaa------GG- -5'
5135 5' -55.9 NC_001798.1 + 22340 0.72 0.63233
Target:  5'- cGGACGCGCggGCGUcGGGGcGGgg-CCg -3'
miRNA:   3'- cCCUGUGCGagCGCA-UCCC-CCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 27181 0.67 0.877054
Target:  5'- cGGGGC-CGCggGCGcGGGGGGa---- -3'
miRNA:   3'- -CCCUGuGCGagCGCaUCCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 27262 0.67 0.897255
Target:  5'- cGGGAC-CGCagccccguggCGCGcGGGGGGgaggggcugCCg -3'
miRNA:   3'- -CCCUGuGCGa---------GCGCaUCCCCCaaa------GG- -5'
5135 5' -55.9 NC_001798.1 + 29500 0.67 0.90961
Target:  5'- cGGGGC-CGCccCGagagGGGGGGaUUCCc -3'
miRNA:   3'- -CCCUGuGCGa-GCgca-UCCCCCaAAGG- -5'
5135 5' -55.9 NC_001798.1 + 30184 0.66 0.915446
Target:  5'- gGGGACACGg-CGC---GGGGGUcccgCCu -3'
miRNA:   3'- -CCCUGUGCgaGCGcauCCCCCAaa--GG- -5'
5135 5' -55.9 NC_001798.1 + 31345 0.73 0.582103
Target:  5'- gGGGGCGCGCgcaggCGCGgcGGGuGGgcgaagacgCCg -3'
miRNA:   3'- -CCCUGUGCGa----GCGCauCCC-CCaaa------GG- -5'
5135 5' -55.9 NC_001798.1 + 33406 0.67 0.882632
Target:  5'- aGGGCGCcugGCUCGgGgagggaggagggGGGGGGUcagCCg -3'
miRNA:   3'- cCCUGUG---CGAGCgCa-----------UCCCCCAaa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.