miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5135 5' -55.9 NC_001798.1 + 34065 0.67 0.89074
Target:  5'- cGGGCACGCgccuUUGgGguuguugggGGGGGGUgaCCg -3'
miRNA:   3'- cCCUGUGCG----AGCgCa--------UCCCCCAaaGG- -5'
5135 5' -55.9 NC_001798.1 + 34816 0.66 0.936478
Target:  5'- cGGGGCccccGCGCUC-CGccGGGGGcccgggCCg -3'
miRNA:   3'- -CCCUG----UGCGAGcGCauCCCCCaaa---GG- -5'
5135 5' -55.9 NC_001798.1 + 36519 0.67 0.907211
Target:  5'- gGGGGCGCGCg-GCGgccgGGcGGGGgcgcgcggcggCCg -3'
miRNA:   3'- -CCCUGUGCGagCGCa---UC-CCCCaaa--------GG- -5'
5135 5' -55.9 NC_001798.1 + 36561 0.67 0.907211
Target:  5'- gGGGGCGCGCg-GCGgccgGGcGGGGgcgcgcggcggCCg -3'
miRNA:   3'- -CCCUGUGCGagCGCa---UC-CCCCaaa--------GG- -5'
5135 5' -55.9 NC_001798.1 + 36624 0.71 0.702403
Target:  5'- gGGGGCGCGCg-GCGgccgggcGGGGGcgcgcUUUCCc -3'
miRNA:   3'- -CCCUGUGCGagCGCau-----CCCCC-----AAAGG- -5'
5135 5' -55.9 NC_001798.1 + 38351 0.69 0.804782
Target:  5'- aGGGGCGuCGUugucaugUUGCGaGGGGGGggUCg -3'
miRNA:   3'- -CCCUGU-GCG-------AGCGCaUCCCCCaaAGg -5'
5135 5' -55.9 NC_001798.1 + 38931 0.67 0.897255
Target:  5'- aGGGGCGCaggCGCGUGGcGaGGuUUUCCa -3'
miRNA:   3'- -CCCUGUGcgaGCGCAUC-C-CCcAAAGG- -5'
5135 5' -55.9 NC_001798.1 + 39421 0.75 0.503834
Target:  5'- cGGGGCGCgGCcgucCGCGUGcGGGGGggUCa -3'
miRNA:   3'- -CCCUGUG-CGa---GCGCAU-CCCCCaaAGg -5'
5135 5' -55.9 NC_001798.1 + 39452 0.72 0.65247
Target:  5'- aGGGACAgCGCcaUCaGCGgAGGGGGgg-CCu -3'
miRNA:   3'- -CCCUGU-GCG--AG-CGCaUCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 40826 0.67 0.884006
Target:  5'- gGGGGC-CGCUgguucCGCGUuuuuGGGGGccgagCCc -3'
miRNA:   3'- -CCCUGuGCGA-----GCGCAu---CCCCCaaa--GG- -5'
5135 5' -55.9 NC_001798.1 + 41129 0.66 0.941158
Target:  5'- cGGGugAUuuUCGUGUAGGGGuaUUgCa -3'
miRNA:   3'- -CCCugUGcgAGCGCAUCCCCcaAAgG- -5'
5135 5' -55.9 NC_001798.1 + 41436 0.68 0.839229
Target:  5'- -aGACGCGg--GCGUGGGGGG--UCCa -3'
miRNA:   3'- ccCUGUGCgagCGCAUCCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 43524 0.66 0.921051
Target:  5'- aGGcGGCG-GC-CGCGUcucccgccAGGGcGGUUUCCc -3'
miRNA:   3'- -CC-CUGUgCGaGCGCA--------UCCC-CCAAAGG- -5'
5135 5' -55.9 NC_001798.1 + 45860 0.68 0.847185
Target:  5'- -cGGCccccCGCUUGCuUGGGGGGgcgUCCg -3'
miRNA:   3'- ccCUGu---GCGAGCGcAUCCCCCaa-AGG- -5'
5135 5' -55.9 NC_001798.1 + 45930 0.67 0.89074
Target:  5'- gGGGugGCGgUCGCGUccGGaaccccucuGGGGUaggCCc -3'
miRNA:   3'- -CCCugUGCgAGCGCA--UC---------CCCCAaa-GG- -5'
5135 5' -55.9 NC_001798.1 + 50562 0.73 0.592106
Target:  5'- gGGGuuACGCGCg-GgGUGGGGGGUgugugCCg -3'
miRNA:   3'- -CCC--UGUGCGagCgCAUCCCCCAaa---GG- -5'
5135 5' -55.9 NC_001798.1 + 57522 0.66 0.915446
Target:  5'- gGGGGgGCGUggGUGUgguucGGGGGGcggaugcgUUCCg -3'
miRNA:   3'- -CCCUgUGCGagCGCA-----UCCCCCa-------AAGG- -5'
5135 5' -55.9 NC_001798.1 + 57746 0.68 0.854951
Target:  5'- uGGGCGCGCccggCGCagcgAGGaGGGUUgCCg -3'
miRNA:   3'- cCCUGUGCGa---GCGca--UCC-CCCAAaGG- -5'
5135 5' -55.9 NC_001798.1 + 59667 0.74 0.523031
Target:  5'- gGGGGCGacucgGCUCGCGUGGGGGcGg---- -3'
miRNA:   3'- -CCCUGUg----CGAGCGCAUCCCC-Caaagg -5'
5135 5' -55.9 NC_001798.1 + 61827 0.67 0.89074
Target:  5'- cGGGCACGCcuUCGCcccGGGGGa--CCg -3'
miRNA:   3'- cCCUGUGCG--AGCGcauCCCCCaaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.