miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5135 5' -55.9 NC_001798.1 + 98541 0.67 0.903546
Target:  5'- gGGGGCuugauuugcGCGCUgGuCGUGGGGgcgcuGGUggCCg -3'
miRNA:   3'- -CCCUG---------UGCGAgC-GCAUCCC-----CCAaaGG- -5'
5135 5' -55.9 NC_001798.1 + 97518 0.66 0.921051
Target:  5'- cGGGC-CGC-CGCGgaggAGGGGGg---- -3'
miRNA:   3'- cCCUGuGCGaGCGCa---UCCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 97475 0.66 0.921051
Target:  5'- gGGGGCcgGCGg-CGCGaccGGGGGGg--CCg -3'
miRNA:   3'- -CCCUG--UGCgaGCGCa--UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 96431 0.66 0.915446
Target:  5'- uGGAgUACGCguggCGCG-AGGGGGagcggcUCCu -3'
miRNA:   3'- cCCU-GUGCGa---GCGCaUCCCCCaa----AGG- -5'
5135 5' -55.9 NC_001798.1 + 95782 0.68 0.854951
Target:  5'- uGGAUAUGCUCuagggGCGgggguGGGGGggUCg -3'
miRNA:   3'- cCCUGUGCGAG-----CGCau---CCCCCaaAGg -5'
5135 5' -55.9 NC_001798.1 + 94394 0.66 0.936478
Target:  5'- cGGuCGCGCUCuCGgAGGGGGcggCUa -3'
miRNA:   3'- cCCuGUGCGAGcGCaUCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 92036 0.66 0.926425
Target:  5'- aGGGGC-CGCUCgGCGaacGGGcGGGUguagaccCCa -3'
miRNA:   3'- -CCCUGuGCGAG-CGCa--UCC-CCCAaa-----GG- -5'
5135 5' -55.9 NC_001798.1 + 88077 0.66 0.926425
Target:  5'- uGGGGCGgcggcgucuaGCUCGCGgAGGGcGGccagCCg -3'
miRNA:   3'- -CCCUGUg---------CGAGCGCaUCCC-CCaaa-GG- -5'
5135 5' -55.9 NC_001798.1 + 85997 0.71 0.682542
Target:  5'- cGGG--GCGCUgGCGcaGGGGGGUgagCCg -3'
miRNA:   3'- -CCCugUGCGAgCGCa-UCCCCCAaa-GG- -5'
5135 5' -55.9 NC_001798.1 + 85266 0.67 0.877054
Target:  5'- cGGGGC-CGCgCGCGaggcuucgGGGGGGcgggggCCg -3'
miRNA:   3'- -CCCUGuGCGaGCGCa-------UCCCCCaaa---GG- -5'
5135 5' -55.9 NC_001798.1 + 78939 0.69 0.787922
Target:  5'- uGGGACGaggucugggguCGCUuuggcCGCGUccGGGGGGgcgCCu -3'
miRNA:   3'- -CCCUGU-----------GCGA-----GCGCA--UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 71685 0.68 0.854951
Target:  5'- cGGcGCACGCUCGU--GGGGGaGUUUg- -3'
miRNA:   3'- -CCcUGUGCGAGCGcaUCCCC-CAAAgg -5'
5135 5' -55.9 NC_001798.1 + 69522 0.7 0.741365
Target:  5'- cGGGGCGuggcccgcgaGCUCGCGcgggcUGGuGGuGGUUUCCa -3'
miRNA:   3'- -CCCUGUg---------CGAGCGC-----AUC-CC-CCAAAGG- -5'
5135 5' -55.9 NC_001798.1 + 61827 0.67 0.89074
Target:  5'- cGGGCACGCcuUCGCcccGGGGGa--CCg -3'
miRNA:   3'- cCCUGUGCG--AGCGcauCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 59667 0.74 0.523031
Target:  5'- gGGGGCGacucgGCUCGCGUGGGGGcGg---- -3'
miRNA:   3'- -CCCUGUg----CGAGCGCAUCCCC-Caaagg -5'
5135 5' -55.9 NC_001798.1 + 57746 0.68 0.854951
Target:  5'- uGGGCGCGCccggCGCagcgAGGaGGGUUgCCg -3'
miRNA:   3'- cCCUGUGCGa---GCGca--UCC-CCCAAaGG- -5'
5135 5' -55.9 NC_001798.1 + 57522 0.66 0.915446
Target:  5'- gGGGGgGCGUggGUGUgguucGGGGGGcggaugcgUUCCg -3'
miRNA:   3'- -CCCUgUGCGagCGCA-----UCCCCCa-------AAGG- -5'
5135 5' -55.9 NC_001798.1 + 50562 0.73 0.592106
Target:  5'- gGGGuuACGCGCg-GgGUGGGGGGUgugugCCg -3'
miRNA:   3'- -CCC--UGUGCGagCgCAUCCCCCAaa---GG- -5'
5135 5' -55.9 NC_001798.1 + 45930 0.67 0.89074
Target:  5'- gGGGugGCGgUCGCGUccGGaaccccucuGGGGUaggCCc -3'
miRNA:   3'- -CCCugUGCgAGCGCA--UC---------CCCCAaa-GG- -5'
5135 5' -55.9 NC_001798.1 + 45860 0.68 0.847185
Target:  5'- -cGGCccccCGCUUGCuUGGGGGGgcgUCCg -3'
miRNA:   3'- ccCUGu---GCGAGCGcAUCCCCCaa-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.