miRNA display CGI


Results 41 - 60 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5135 5' -55.9 NC_001798.1 + 43524 0.66 0.921051
Target:  5'- aGGcGGCG-GC-CGCGUcucccgccAGGGcGGUUUCCc -3'
miRNA:   3'- -CC-CUGUgCGaGCGCA--------UCCC-CCAAAGG- -5'
5135 5' -55.9 NC_001798.1 + 41436 0.68 0.839229
Target:  5'- -aGACGCGg--GCGUGGGGGG--UCCa -3'
miRNA:   3'- ccCUGUGCgagCGCAUCCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 41129 0.66 0.941158
Target:  5'- cGGGugAUuuUCGUGUAGGGGuaUUgCa -3'
miRNA:   3'- -CCCugUGcgAGCGCAUCCCCcaAAgG- -5'
5135 5' -55.9 NC_001798.1 + 40826 0.67 0.884006
Target:  5'- gGGGGC-CGCUgguucCGCGUuuuuGGGGGccgagCCc -3'
miRNA:   3'- -CCCUGuGCGA-----GCGCAu---CCCCCaaa--GG- -5'
5135 5' -55.9 NC_001798.1 + 39452 0.72 0.65247
Target:  5'- aGGGACAgCGCcaUCaGCGgAGGGGGgg-CCu -3'
miRNA:   3'- -CCCUGU-GCG--AG-CGCaUCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 39421 0.75 0.503834
Target:  5'- cGGGGCGCgGCcgucCGCGUGcGGGGGggUCa -3'
miRNA:   3'- -CCCUGUG-CGa---GCGCAU-CCCCCaaAGg -5'
5135 5' -55.9 NC_001798.1 + 38931 0.67 0.897255
Target:  5'- aGGGGCGCaggCGCGUGGcGaGGuUUUCCa -3'
miRNA:   3'- -CCCUGUGcgaGCGCAUC-C-CCcAAAGG- -5'
5135 5' -55.9 NC_001798.1 + 38351 0.69 0.804782
Target:  5'- aGGGGCGuCGUugucaugUUGCGaGGGGGGggUCg -3'
miRNA:   3'- -CCCUGU-GCG-------AGCGCaUCCCCCaaAGg -5'
5135 5' -55.9 NC_001798.1 + 36624 0.71 0.702403
Target:  5'- gGGGGCGCGCg-GCGgccgggcGGGGGcgcgcUUUCCc -3'
miRNA:   3'- -CCCUGUGCGagCGCau-----CCCCC-----AAAGG- -5'
5135 5' -55.9 NC_001798.1 + 36561 0.67 0.907211
Target:  5'- gGGGGCGCGCg-GCGgccgGGcGGGGgcgcgcggcggCCg -3'
miRNA:   3'- -CCCUGUGCGagCGCa---UC-CCCCaaa--------GG- -5'
5135 5' -55.9 NC_001798.1 + 36519 0.67 0.907211
Target:  5'- gGGGGCGCGCg-GCGgccgGGcGGGGgcgcgcggcggCCg -3'
miRNA:   3'- -CCCUGUGCGagCGCa---UC-CCCCaaa--------GG- -5'
5135 5' -55.9 NC_001798.1 + 34816 0.66 0.936478
Target:  5'- cGGGGCccccGCGCUC-CGccGGGGGcccgggCCg -3'
miRNA:   3'- -CCCUG----UGCGAGcGCauCCCCCaaa---GG- -5'
5135 5' -55.9 NC_001798.1 + 34065 0.67 0.89074
Target:  5'- cGGGCACGCgccuUUGgGguuguugggGGGGGGUgaCCg -3'
miRNA:   3'- cCCUGUGCG----AGCgCa--------UCCCCCAaaGG- -5'
5135 5' -55.9 NC_001798.1 + 33406 0.67 0.882632
Target:  5'- aGGGCGCcugGCUCGgGgagggaggagggGGGGGGUcagCCg -3'
miRNA:   3'- cCCUGUG---CGAGCgCa-----------UCCCCCAaa-GG- -5'
5135 5' -55.9 NC_001798.1 + 31345 0.73 0.582103
Target:  5'- gGGGGCGCGCgcaggCGCGgcGGGuGGgcgaagacgCCg -3'
miRNA:   3'- -CCCUGUGCGa----GCGCauCCC-CCaaa------GG- -5'
5135 5' -55.9 NC_001798.1 + 30184 0.66 0.915446
Target:  5'- gGGGACACGg-CGC---GGGGGUcccgCCu -3'
miRNA:   3'- -CCCUGUGCgaGCGcauCCCCCAaa--GG- -5'
5135 5' -55.9 NC_001798.1 + 29500 0.67 0.90961
Target:  5'- cGGGGC-CGCccCGagagGGGGGGaUUCCc -3'
miRNA:   3'- -CCCUGuGCGa-GCgca-UCCCCCaAAGG- -5'
5135 5' -55.9 NC_001798.1 + 27262 0.67 0.897255
Target:  5'- cGGGAC-CGCagccccguggCGCGcGGGGGGgaggggcugCCg -3'
miRNA:   3'- -CCCUGuGCGa---------GCGCaUCCCCCaaa------GG- -5'
5135 5' -55.9 NC_001798.1 + 27181 0.67 0.877054
Target:  5'- cGGGGC-CGCggGCGcGGGGGGa---- -3'
miRNA:   3'- -CCCUGuGCGagCGCaUCCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 22340 0.72 0.63233
Target:  5'- cGGACGCGCggGCGUcGGGGcGGgg-CCg -3'
miRNA:   3'- cCCUGUGCGagCGCA-UCCC-CCaaaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.