miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5135 5' -55.9 NC_001798.1 + 153072 0.68 0.839229
Target:  5'- uGGGGCGgGCggaGCGgcGGGGcGgcgCCg -3'
miRNA:   3'- -CCCUGUgCGag-CGCauCCCC-CaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 150809 0.67 0.909014
Target:  5'- cGGGGCGCcgccgcugcugcuGCUcCGCGgggcgccAGGGGGcg-CCg -3'
miRNA:   3'- -CCCUGUG-------------CGA-GCGCa------UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 150640 0.7 0.760327
Target:  5'- cGGGGC-UGuCUCGCG--GGGGGcgUCCu -3'
miRNA:   3'- -CCCUGuGC-GAGCGCauCCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 150170 0.68 0.872782
Target:  5'- gGGGGCGggccgccgcccccucCGCg-GCGUGGGGGGcggcaCCg -3'
miRNA:   3'- -CCCUGU---------------GCGagCGCAUCCCCCaaa--GG- -5'
5135 5' -55.9 NC_001798.1 + 149400 0.66 0.941158
Target:  5'- cGGGGgGCG-UCGgGUAgucGGGGGg--CCu -3'
miRNA:   3'- -CCCUgUGCgAGCgCAU---CCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 147490 0.67 0.877054
Target:  5'- gGGGACccAgGCUC-CGggggGGGGGGgcgCCu -3'
miRNA:   3'- -CCCUG--UgCGAGcGCa---UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 144545 0.67 0.897255
Target:  5'- gGGGAgAC-C-CGcCGUGGGGGGgcgUUCg -3'
miRNA:   3'- -CCCUgUGcGaGC-GCAUCCCCCa--AAGg -5'
5135 5' -55.9 NC_001798.1 + 144214 0.68 0.869164
Target:  5'- aGGAgGCGC--GCGguUAGGGGGUUcgcgagcUCCg -3'
miRNA:   3'- cCCUgUGCGagCGC--AUCCCCCAA-------AGG- -5'
5135 5' -55.9 NC_001798.1 + 137450 0.81 0.24713
Target:  5'- gGGGACGCGCUCGCccggaaaucGgcGGGGGUUg-- -3'
miRNA:   3'- -CCCUGUGCGAGCG---------CauCCCCCAAagg -5'
5135 5' -55.9 NC_001798.1 + 136807 0.66 0.915446
Target:  5'- cGGACGCGCUCgaagggagacGCGUGGcGGG---CCa -3'
miRNA:   3'- cCCUGUGCGAG----------CGCAUCcCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 133732 0.66 0.938378
Target:  5'- gGGGcgcgcgcuucaagcuGCGCGCgccCGCGUGGGGGcg--CUg -3'
miRNA:   3'- -CCC---------------UGUGCGa--GCGCAUCCCCcaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 130207 1.14 0.001602
Target:  5'- uGGGACACGCUCGCGUAGGGGGUUUCCg -3'
miRNA:   3'- -CCCUGUGCGAGCGCAUCCCCCAAAGG- -5'
5135 5' -55.9 NC_001798.1 + 122113 0.66 0.936478
Target:  5'- cGGGGgGCGCuUUGCcagccGGGGGGg--CCc -3'
miRNA:   3'- -CCCUgUGCG-AGCGca---UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 117674 0.7 0.741365
Target:  5'- gGGGACGCGCggccggcggCGUGUAcgcGGGGGa---- -3'
miRNA:   3'- -CCCUGUGCGa--------GCGCAU---CCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 111627 0.67 0.877054
Target:  5'- gGGGGCGgcaGaCUCGCGUcGGGGGcgcUCg -3'
miRNA:   3'- -CCCUGUg--C-GAGCGCAuCCCCCaa-AGg -5'
5135 5' -55.9 NC_001798.1 + 109253 0.67 0.89074
Target:  5'- cGGGGC-UGCUCGCcucgucGGGGUUUgCg -3'
miRNA:   3'- -CCCUGuGCGAGCGcauc--CCCCAAAgG- -5'
5135 5' -55.9 NC_001798.1 + 106053 0.69 0.822778
Target:  5'- cGGGuCACGUgUCGgGgAGGGGGg--CCu -3'
miRNA:   3'- -CCCuGUGCG-AGCgCaUCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 102767 0.77 0.371699
Target:  5'- cGGGA-ACGCUCGCGgcGGGGGa---- -3'
miRNA:   3'- -CCCUgUGCGAGCGCauCCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 101939 0.7 0.778848
Target:  5'- gGGGAUACGa--GgGUGGGGGGa--CCg -3'
miRNA:   3'- -CCCUGUGCgagCgCAUCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 101810 0.72 0.626285
Target:  5'- cGGGCGCcucggguugggguaaGCUCGCGgcGGGGGgaggcgugggUCCc -3'
miRNA:   3'- cCCUGUG---------------CGAGCGCauCCCCCaa--------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.