Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 55142 | 0.67 | 0.83952 |
Target: 5'- gCCuGUCGCCCaUGccCGccCGCCCCCGg -3' miRNA: 3'- aGGcUAGCGGG-ACuaGUa-GUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 46914 | 0.69 | 0.726788 |
Target: 5'- --gGAUCGCCCUGGgcccccacugacUCAUCGCCgcgaugacggggaaaCCCGc -3' miRNA: 3'- aggCUAGCGGGACU------------AGUAGUGG---------------GGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 38436 | 0.66 | 0.877864 |
Target: 5'- gCCGGg-GCCCcacauuuauccggugGGUCAUCGCCCUCc -3' miRNA: 3'- aGGCUagCGGGa--------------CUAGUAGUGGGGGc -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 37350 | 0.66 | 0.860459 |
Target: 5'- cUCgGAUCGCCCccccaccuacgccaUGGUCAUgGCCgcaugUCCGa -3' miRNA: 3'- -AGgCUAGCGGG--------------ACUAGUAgUGG-----GGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 35189 | 0.66 | 0.877162 |
Target: 5'- cUCGAUCGgcggcgggcCCCUGcguUCGUugcugccgCGCCCCCGg -3' miRNA: 3'- aGGCUAGC---------GGGACu--AGUA--------GUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 32056 | 0.68 | 0.742151 |
Target: 5'- cCCGG-CGUCCgcggGcgCcgCGCCCCCGu -3' miRNA: 3'- aGGCUaGCGGGa---CuaGuaGUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 31705 | 0.66 | 0.855164 |
Target: 5'- aCCGcgCGCCCcGGUCG-CGCaugaCCCa -3' miRNA: 3'- aGGCuaGCGGGaCUAGUaGUGg---GGGc -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 31578 | 0.67 | 0.806115 |
Target: 5'- gCCGcgCGCCCccgcgcGGcCGUCGCCCCgCGc -3' miRNA: 3'- aGGCuaGCGGGa-----CUaGUAGUGGGG-GC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 30864 | 0.7 | 0.673662 |
Target: 5'- gUCCG--CGCCCUG-UCGccCACCCCCc -3' miRNA: 3'- -AGGCuaGCGGGACuAGUa-GUGGGGGc -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 23061 | 0.66 | 0.870033 |
Target: 5'- gCCGuUCGCac-GAUCccGUCGCCCCCc -3' miRNA: 3'- aGGCuAGCGggaCUAG--UAGUGGGGGc -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 15112 | 0.66 | 0.877162 |
Target: 5'- gCCGGUgGCgCUG-UCGUCGUCCUCGg -3' miRNA: 3'- aGGCUAgCGgGACuAGUAGUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 1482 | 0.67 | 0.823151 |
Target: 5'- gCCGggCGCCaUGG-CGUCGCCCgCGc -3' miRNA: 3'- aGGCuaGCGGgACUaGUAGUGGGgGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 104 | 0.66 | 0.877162 |
Target: 5'- cCCGcgCGCCCccuucccCGUCccuCCCCCGg -3' miRNA: 3'- aGGCuaGCGGGacua---GUAGu--GGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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